Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A04
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0771 - 5982826-5983327,5983424-5984772                           33   0.40 
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    32   0.53 
07_03_1641 + 28318256-28318309,28318420-28318458,28318544-283185...    32   0.70 
10_08_0674 + 19788198-19789817                                         28   8.6  
03_05_0865 - 28365430-28367640                                         28   8.6  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    28   8.6  

>01_01_0771 - 5982826-5983327,5983424-5984772
          Length = 616

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 371 VTASGFTAGLFQSLQVFTGLSSVSLIFIFV 282
           + A+G   GLF SL V + L SVS +FIF+
Sbjct: 411 IAAAGACIGLFSSLDVLSSLLSVSTLFIFM 440


>02_05_0030 + 25209067-25209130,25209231-25209400,25210482-25211668,
            25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 330  SGVHGAII-CVPDIYLCLDRKTR*YKFTIIDTVTTQNSRFIVSYTYF 193
            +G HG +   VP    C D ++R       DT TT + + ++SYT+F
Sbjct: 1156 AGRHGVLFFSVPGKIACYDAESRAVSVVWQDTATTSSPKHLLSYTWF 1202


>07_03_1641 +
           28318256-28318309,28318420-28318458,28318544-28318597,
           28318653-28318780,28318993-28319044,28319211-28319309
          Length = 141

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 351 GKPRSRHAAIMTLHWWMHWFWVTMLLILLGSESAFGAPQSEELLHITPELETERHSERQ 527
           G P SRH +      +  WFW  M+L   G++S     Q+ +      E +T+ H E+Q
Sbjct: 79  GAPTSRHRSRQARMSYCSWFW-HMILGNEGNQSNEDTNQAPQPREPAQEFDTDAHMEKQ 136


>10_08_0674 + 19788198-19789817
          Length = 539

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 405 WFWVTMLLILLGSESAFGAPQSEELLHITPEL 500
           W W+  LL+L G ++A  A     +L   P+L
Sbjct: 152 WAWMEPLLLLCGQDAAIAAAAQRYILFCLPDL 183


>03_05_0865 - 28365430-28367640
          Length = 736

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/98 (24%), Positives = 41/98 (41%)
 Frame = +2

Query: 569 PTPVSKKHYVKQPN*RANIGDQRYPSQRDRDRSPSDTVDRGQRKRNSTE*YCQCNFDNQR 748
           P P+S        +   +  D+     RDRDR      DR +R+ + +    + + D  R
Sbjct: 53  PPPLSNPPRDSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDDS----RRDRDRDR 108

Query: 749 DG*RHDDTVKCKQPHEGRVHQRFDSHRGNS*QQDRDRE 862
           D  R D + + +    G   +  D  RG+  ++  DRE
Sbjct: 109 DRDRGDSSRRDRDRERGDRDRDRDRERGDRDRERGDRE 146


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 706 VTFA--LAAVHCIAG*TISVTLTWVTLVANIGSSVWLFNVMFFANGC-GVVMITVLLMYR 536
           V FA  L  V C+    I VT  W+      G  +W   V++F  GC G   +    +YR
Sbjct: 427 VAFASLLGLVLCLFWNIICVTAAWIK---GEGPKIWFLAVIYFILGCPGAYYLWYRPLYR 483

Query: 535 A 533
           A
Sbjct: 484 A 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,119,737
Number of Sequences: 37544
Number of extensions: 434431
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)