Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A04
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    31   1.5  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    31   1.5  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   3.4  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical protein
            F33A8.1 protein.
          Length = 897

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/86 (29%), Positives = 34/86 (39%)
 Frame = +2

Query: 608  N*RANIGDQRYPSQRDRDRSPSDTVDRGQRKRNSTE*YCQCNFDNQRDG*RHDDTVKCKQ 787
            N R   GD R    +DR R  SD  DR  R+R       +    ++RD  R+ D    ++
Sbjct: 790  NRRPERGDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRD--RNKDQEDHRE 847

Query: 788  PHEGRVHQRFDSHRGNS*QQDRDRET 865
                R   R D         D DR+T
Sbjct: 848  DRRDRSKDREDRRDRRRHDSDDDRKT 873


>U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical
           protein C16H3.3b protein.
          Length = 655

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +3

Query: 459 APQSEELLHITPELETERHSERQNRALYISKTVI--ITTPHPLAKNITLNNQTDEPI--- 623
           AP  EE     P +  E  SE     +Y     I  +T   P+ +NI+ NN+  EP+   
Sbjct: 76  APSIEETSGQAPPVIEEPMSESNTEEIYEESPKIEELTIKEPVIENISFNNEIAEPLFKP 135

Query: 624 --LATNVTQVNVTE 659
             L  N   VN  E
Sbjct: 136 TELTKNTNPVNEIE 149


>U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical
           protein C16H3.3a protein.
          Length = 791

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +3

Query: 459 APQSEELLHITPELETERHSERQNRALYISKTVI--ITTPHPLAKNITLNNQTDEPI--- 623
           AP  EE     P +  E  SE     +Y     I  +T   P+ +NI+ NN+  EP+   
Sbjct: 212 APSIEETSGQAPPVIEEPMSESNTEEIYEESPKIEELTIKEPVIENISFNNEIAEPLFKP 271

Query: 624 --LATNVTQVNVTE 659
             L  N   VN  E
Sbjct: 272 TELTKNTNPVNEIE 285


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin protein.
          Length = 897

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/86 (29%), Positives = 34/86 (39%)
 Frame = +2

Query: 608  N*RANIGDQRYPSQRDRDRSPSDTVDRGQRKRNSTE*YCQCNFDNQRDG*RHDDTVKCKQ 787
            N R   GD R    +DR R  SD  DR  R+R       +    ++RD  R+ D    ++
Sbjct: 790  NRRPERGDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRD--RNKDQEDHRE 847

Query: 788  PHEGRVHQRFDSHRGNS*QQDRDRET 865
                R   R D         D DR+T
Sbjct: 848  DRRDRSKDREDRRDRRRHDSDDDRKT 873


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 644 SQRDRDRSPSDTVDRGQRKRNSTE*YCQCNFDNQ--RDG*RHDDTVKCKQPHEGRVHQRF 817
           ++  R RS S + DRG  ++ STE +   +  ++  RD    D   + ++  E + H+R 
Sbjct: 256 AEMKRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRD 315

Query: 818 DSHR 829
           D HR
Sbjct: 316 DRHR 319


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 414  VTMLLILLGSESAFGAPQSEELLHITPELETERHSERQNRALYISKTVIITTPHPLAKNI 593
            V+   I+L SE   G+P+S +LLH+T        S   + A  IS    +  P     N+
Sbjct: 988  VSNAYIILESEDQEGSPKSFKLLHVTTSPSPSSESSCISPAHLISPPSTVPLPSN-CSNV 1046

Query: 594  TLNN-QTDEPILATNVTQVNVTEIVH 668
             L N +T   I   N+     +E+++
Sbjct: 1047 KLQNLKTSLQIHENNLLIPTQSELIN 1072


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +2

Query: 629 DQRYPSQRDRDRSPSDTVDRGQRKRNSTE*YCQCNFDNQRDG*RHDDTVKCKQPHEGRVH 808
           D+    +RDRDRS  D    G+ K        + + D+ R   R  D V+ K+  E R  
Sbjct: 552 DRDRDRERDRDRSHRDVRSSGRSKDIKASSSHRRDRDDARRKDRRRDDVRKKERREKREE 611

Query: 809 QRFDSHRGNS*QQDRD 856
           +  D    ++  +D D
Sbjct: 612 EDDDQKTKDAESKDED 627


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,295,496
Number of Sequences: 27780
Number of extensions: 397346
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)