Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A04
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 344 LFQSLQVFTGLSSVSLIFIFVSTGKPVDTN 255
           LF+ L  F GL S ++I++     +P+D N
Sbjct: 248 LFRKLP-FAGLHSHTIIYLSAKGHRPIDDN 276


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 351 GKPRSRHAAIMTLHWWMHWFWVTMLLIL 434
           G+  S+ AA++       WFWVT   +L
Sbjct: 164 GRLNSKQAAVIIA---FTWFWVTPFTVL 188


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 169 ELF-TLKSFVTYILSNKCIRFASYFVFQ 89
           ELF  +  FV+Y++   CI     +VFQ
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVFQ 443


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 169 ELF-TLKSFVTYILSNKCIRFASYFVFQ 89
           ELF  +  FV+Y++   CI     +VFQ
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVFQ 496


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 351 GKPRSRHAAIMTLHWWMHWFWVTMLLIL 434
           G+  S+ AA++       WFWVT   +L
Sbjct: 164 GRLNSKQAAVIIA---FTWFWVTPFTVL 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,929
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)