Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A03
         (1192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    37   0.032
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    33   0.40 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 37/166 (22%), Positives = 39/166 (23%), Gaps = 4/166 (2%)
 Frame = +3

Query: 693  TPPPXNXRXPHDRXPXXXXXXAPXXTXRRPXXTPXAXETXPXPXXPRTXPXXNXKXXNNP 872
            TP P     P    P       P  T   P   P   +  P P  P      +      P
Sbjct: 23   TPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAP 82

Query: 873  ---ERPXXAXXTXAPDXXX-PXXGXXPXRTPQXPXXXXTXPKXXPXXXXPTXXXPXGPXX 1040
                 P  A    AP     P         P  P      P   P    P    P  P  
Sbjct: 83   PLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPP-PHY 141

Query: 1041 PXXAXQKNXPPTXXHXEXXXXRXXXPXXEXHSQXPPXPQXAPXPXP 1178
            P        PP   H          P    HS  PP PQ      P
Sbjct: 142  PPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYPQQQPP 187


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 22/59 (37%), Positives = 23/59 (38%)
 Frame = +3

Query: 654 SXAPNXPNPRXKXTPPPXNXRXPHDRXPXXXXXXAPXXTXRRPXXTPXAXETXPXPXXP 830
           S  P  P PR   TPPP   R P  R P       P    RRP  TP + E    P  P
Sbjct: 136 SSPPPPPPPRVPRTPPP---RSPPPRRPPM----TPPSPQRRPPRTPPSPEPRNPPRTP 187


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = +3

Query: 774 RRPXXTPXAXETXPXPXXPRTXPXXNXKXXNNPERPXXAXXTXAPDXXXPXXGXXP 941
           RRP  TP   ET P P   +T          N  R      + +P    P  G  P
Sbjct: 472 RRPSTTPQIQETPPTPAQKKTYGYAPTAAPTNNSRGTNTWRSTSPSAVEPSGGMSP 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.129    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,462
Number of Sequences: 27780
Number of extensions: 95207
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)