Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A01
         (1217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.75 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -1

Query: 1052 PPPPPLFXFXXXLPXPXPXXXXXXXFXFSXPXPPXXPLXSXFFXXXXPPPXP 897
            PPPPP        P P P            P PP  P  +       PPP P
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMG-GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 1053 PPPPPSLXFXXXXXLPXPXXPXXXXFLXLXXPPPP 949
            PPPPP++        P P  P          PPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 384 GGXKRGXGKXGXXGGKRGXXXXXGGXXXXKKXGGXKKXXGGGGKKXGGG 530
           G   RG G+ G  GG+ G     GG       GG +   GGG +    G
Sbjct: 133 GPAGRG-GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.303    0.143    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,847
Number of Sequences: 5004
Number of extensions: 23230
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)