Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P24
         (951 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.7  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.5  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 853 PGRXPGNXVXXFPPPXXXGXPPKPPP 930
           PG  P      F PP   G PP PPP
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPP 339



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 853 PGRXPGNXVXXFPPPXXXGXPPKPPPXRXPXXG 951
           PGR PG       PP   G PP PPP R    G
Sbjct: 304 PGRTPG-------PPGMPGMPPPPPPSRFGPPG 329


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 853 PGRXPGNXVXXFPPPXXXGXPPKPPP 930
           PG  P      F PP   G PP PPP
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPP 349



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 853 PGRXPGNXVXXFPPPXXXGXPPKPPPXRXPXXG 951
           PGR PG       PP   G PP PPP R    G
Sbjct: 314 PGRTPG-------PPGMPGMPPPPPPSRFGPPG 339


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 856 GRXPGNXVXXFPPPXXXGXPPKPPPXR 936
           G  P       PPP   G PP PPP R
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPR 304


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 856 GRXPGNXVXXFPPPXXXGXPPKPPPXR 936
           G  P       PPP   G PP PPP R
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPR 325


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 856 GRXPGNXVXXFPPPXXXGXPPKPPPXR 936
           G  P       PPP   G PP PPP R
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPR 310


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 853 PGRXPGNXVXXFPPPXXXGXPPKPPP 930
           PG  P   +   PPP   G PP PPP
Sbjct: 696 PGVPPMFNLNAPPPPGIPGYPPAPPP 721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,598
Number of Sequences: 27780
Number of extensions: 138893
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)