Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P22
(946 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 182 4e-46
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 181 6e-46
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 153 3e-37
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 150 2e-36
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 29 5.4
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 5.4
01_01_0307 + 2513678-2513772,2514064-2514682 29 5.4
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 182 bits (443), Expect = 4e-46
Identities = 93/198 (46%), Positives = 117/198 (59%), Gaps = 3/198 (1%)
Frame = +1
Query: 247 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 426
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 427 IWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQ 606
WN+DGSST QA G +S+ L P+AI+KDPFR GN+ILVMCDTY EP +N R
Sbjct: 851 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAA 910
Query: 607 EAYD--KCKDDEPWFGIEQEYILLDSDLR-PLRVXPGWFPPPQGPYYCGVGATKSLPETL 777
+ + K PWFGIEQEY LL D+ PL G +P PQGPYYC VG+ KS +
Sbjct: 911 QVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDI 970
Query: 778 SXPTIDCCLYAGVPIAGT 831
S CLYAG+ I+GT
Sbjct: 971 SDAHYKACLYAGINISGT 988
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 181 bits (441), Expect = 6e-46
Identities = 88/172 (51%), Positives = 110/172 (63%), Gaps = 3/172 (1%)
Frame = +1
Query: 322 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 501
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 502 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 675
I+KDPFR+GN+ILVMCD Y EP +N R + + + + +EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 676 SDLR-PLRVXPGWFPPPQGPYYCGVGATKSLPETLSXPTIDCCLYAGVPIAG 828
D+ PL G FP PQGPYYCG+GA KS + CLYAG+ I+G
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISG 188
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 153 bits (370), Expect = 3e-37
Identities = 80/173 (46%), Positives = 103/173 (59%), Gaps = 3/173 (1%)
Frame = +1
Query: 319 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 498
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 499 AIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILL 672
AI+KDPFRRG++ILVMCD Y EP +N R S + ++ + PW+GIEQEY LL
Sbjct: 76 AIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLL 135
Query: 673 DSDLR-PLRVXPGWFPPPQGPYYCGVGATKSLPETLSXPTIDCCLYAGVPIAG 828
D+ PL GW GPYYC GA K+ + C+YAG+ I+G
Sbjct: 136 QKDVNWPL----GW----PGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISG 180
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 150 bits (363), Expect = 2e-36
Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Frame = +1
Query: 367 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 546
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 547 CDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILLDSDLR-PLRVXPGWFP 717
CD Y N EP +NNR + ++ K +EPW+GIEQEY LL + PL G +P
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 718 PPQGPYYCGVGATKSLPETLSXPTIDCCLYAGVPIAG 828
PQGPYYC GA KS + CL+AG+ I+G
Sbjct: 179 GPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISG 215
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 855 HXKASLQRCT--GNRYASIKTAIDSGXRQGFWQRLCGTDTA 739
H A+L+ CT G + ++ D+ G+WQRL G TA
Sbjct: 168 HGTAALRICTTQGGAVGNGRSQYDARRHGGWWQRLVGCPTA 208
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 335 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 234
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 216 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 115
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,084,261
Number of Sequences: 37544
Number of extensions: 698577
Number of successful extensions: 1805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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