Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P16
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   6.6  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 57  DIPKLFACSELHCLVFLYSNSFCRPFHSTPRFLPCSQVLTLIQN 188
           DIP L     LH   +LY+++   P+H   RF P  + L+ + N
Sbjct: 676 DIPPLAVAILLH---YLYTDTLLSPWHLDSRFSPLKENLSKLAN 716


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 655 NSTIRRQMALFLKDPALPTPEMGLTVPPPLNLAVP 759
           + T+  Q  L LK P  P P + +  P P  + VP
Sbjct: 718 SDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVP 752


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = +2

Query: 413 HVPCAAITRRESITAYLHVTGALAFSKGPSGETVATPARHATLAGVWLIKHTEISVERVD 592
           H+ CA +   +  T Y H T   +  +  + E VA      T A V  ++    S+ ++ 
Sbjct: 125 HIQCAGVVVNDYATKYSHWTAVESLGEWCAREGVAAITGVDTRAIVTFLREQGSSLAKIS 184

Query: 593 LPNAWTLE*IKTLFNMKEV 649
           +   +     +   N +EV
Sbjct: 185 IGEEYDANDDEAFINPEEV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,680
Number of Sequences: 5004
Number of extensions: 80237
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)