Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P16
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0958 + 22881718-22881999,22882114-22883880                       32   0.57 
05_07_0242 + 28615573-28616304                                         30   2.3  
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315...    30   3.0  
04_03_0350 + 14755619-14755692,14755697-14755883,14755964-147560...    29   5.3  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    24   5.8  
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813...    28   9.2  

>07_03_0958 + 22881718-22881999,22882114-22883880
          Length = 682

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 470 TGALAFSKGPSGETVATPARHATLAGVWLIKHTEISVERVDLPN 601
           + +  FS   SGE  +T +  AT    WL+KH     E++ L N
Sbjct: 638 SSSAGFSSSTSGERSSTSSSAATAESSWLLKHNNRGSEKIVLGN 681


>05_07_0242 + 28615573-28616304
          Length = 243

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 637 HERGPRNSTIRRQMALFLKDPALPTPEMGLTVPPPLNL--AVPKHNFMXPP 783
           H    R    ++Q  L L  P+ PTP + L +PPP       P+H ++ PP
Sbjct: 74  HRSFHRKDDGQQQQQLRLLIPSPPTPRVPLLMPPPQPQPHPHPQHPYLHPP 124


>08_01_0359 +
           3152483-3152857,3154493-3154855,3155133-3155211,
           3155473-3155879,3156342-3156497,3156728-3156895,
           3156991-3157131,3157739-3157966,3158063-3158176,
           3158293-3158448
          Length = 728

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 522 GVATVS-PDGPFEKASAPVTCKYAVMLSRRVIAAHGTWHIVQNATYSNEIKLSK 364
           GV TV   DG   + S   T  + ++L +   + HGT HI  N  YS ++K  +
Sbjct: 500 GVLTVEFDDGEIFQWSKVTTTIHNLILGKLYCSHHGTMHIKGNRQYSCKLKFKE 553


>04_03_0350 +
           14755619-14755692,14755697-14755883,14755964-14756072,
           14756157-14756379,14756716-14756794,14757222-14757273,
           14757354-14757416,14757519-14757616,14757970-14758031,
           14758066-14758159,14758430-14758509,14758617-14758686,
           14758807-14758864,14758973-14759037,14759127-14759221,
           14759318-14759402
          Length = 497

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 493 RSVRRDRRYTCKARNPGGCVVDKAHRNQCRAC 588
           R++R D R   KA  PGG    K H +QC  C
Sbjct: 33  RALREDWRERSKAIPPGGVYPAKDHCSQCGLC 64


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 24.2 bits (50), Expect(2) = 5.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +1

Query: 493 RSVRRDRRYTCKARNPGGCVVDKAHRNQCRACRLAKCLDAGMNKDAVQHERGPRNSTIR 669
           R +RR R    +     G VVD++     +  R+    ++  N  +V   R  +N  IR
Sbjct: 288 RDIRRSRTSVARGEYAEGRVVDRSKDTSNKRARMEPSAESA-NDKSVPQRRDIKNIDIR 345



 Score = 23.0 bits (47), Expect(2) = 5.8
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 250 DVLSYKC*TSIVGPFRTNYEVQKTCVLLNRNQSICCVVFRQFYFITIGRILYDVPCAVCR 429
           D  +Y   T I+   + N + Q  C   N  +S  C V    Y     R LYD+    CR
Sbjct: 230 DTKAYGLRTDIIRA-KVNPDEQMCCDTSNYPRSDFCKVPVFDYHRHCPRCLYDLCLDCCR 288

Query: 430 D 432
           D
Sbjct: 289 D 289


>10_08_0936 -
           21679002-21679800,21679893-21680116,21681174-21681361,
           21681505-21682597
          Length = 767

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = +1

Query: 562 AHRNQCRACRL-AKCLDA---GMNKDAVQHERGPRNSTIRRQMALFLKDPALPTPEMGLT 729
           AH +  R+ RL A  L     G    AV H   P   T           P  P+     +
Sbjct: 37  AHADYLRSLRLTAAALSRFAQGHPSLAVSHHTAPVLLTTAAPALAPTPTPPPPSSTASSS 96

Query: 730 VPPPLNLAVPKHNFMXPPQNP 792
           +PPP  L +PKH    PP  P
Sbjct: 97  LPPPTPL-LPKHQQAPPPPPP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,775,237
Number of Sequences: 37544
Number of extensions: 549899
Number of successful extensions: 1425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)