Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P15
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.33 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   0.92 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 595 TTAPXXPXXPPPAP--XPPXAXXXPXXPXXXPXXXPPXA 705
           T+AP  P  PPP+P   PP     P  P   P    P A
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(3) = 0.92
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 592 STTAPXXPXXPPPAPXPP 645
           +T+ P     PPP P PP
Sbjct: 180 ATSLPSDYNPPPPPPPPP 197



 Score = 21.4 bits (43), Expect(3) = 0.92
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 622 PPPAPXPPXA 651
           PPP P PP A
Sbjct: 189 PPPPPPPPPA 198



 Score = 21.4 bits (43), Expect(3) = 0.92
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 625 PPAPXPPXAXXXPXXPXXXPXXXPP 699
           PP   P  A   P  P   P   PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +1

Query: 598  TAPXXPXXPPPAPXPPXAXXXPXXPXXXPXXXPPXALXSVXXXXXP 735
            +AP  P  P   P PP A   P  P   P   PP    S      P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPSVPNP 1746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,561
Number of Sequences: 5004
Number of extensions: 24015
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)