Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P14
(959 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 32 0.78
05_01_0142 - 940421-940701,941262-941574 31 1.0
07_01_0479 + 3606663-3607448 31 1.4
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 31 1.4
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.4
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.2
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.5
02_01_0302 - 2021221-2023305 29 7.3
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 31.9 bits (69), Expect = 0.78
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -1
Query: 773 PGXXXXXXXXPXXGXXPPXGGGPPXXXXXXXGGPXPPGGGXXXAXXXXXXPXXXGPXPP 597
PG P G PP G PP G PP GG P G P
Sbjct: 364 PGASPPTTLSPPAGLTPPVGTSPPTDFSPPAAGTTPPAGGFTPPAGGFGTPPLGGFGTP 422
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +1
Query: 610 PXXXGXXXXXXAXXXPPPGGXGPPXXXXXXXGGPPPXGGXXPXXGXXXXXXXXPGGPP 783
P G PPPG PP G P GG P G P G P
Sbjct: 41 PPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYP 98
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +1
Query: 601 GXGPXXXGXXXXXXAXXXPPPGGXGPPXXXXXXXGGPPPXGGXXPXXG 744
G P G PPPG PP GG PP GG G
Sbjct: 45 GAYPPPPGAYPPPPGAYPPPPGAY-PPQHGYPQPGGYPPPGGYPQHGG 91
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 743 PXXGXXPPXGGGPPXXXXXXXGGPXPPGG 657
P PP G PP GG PPGG
Sbjct: 57 PPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Frame = +1
Query: 676 PPXXXXXXXGGPPPXGGXX----PXXGXXXXXXXXPGGPPP 786
PP GGPPP G P G PGGPPP
Sbjct: 190 PPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPP 230
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = -1
Query: 716 GGGPPXXXXXXXGGPXPPGGGXXX-AXXXXXXPXXXGPXPPXXXXXXXXGXGGPRXXG 546
GGGPP G PGGG G PP G GGPR G
Sbjct: 156 GGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGPRPRG 213
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +1
Query: 643 AXXXPPPGGXGPPXXXXXXXGGPPPXGGXXPXXGXXXXXXXXPGGPPP 786
A PPP G PP PPP G P P PPP
Sbjct: 335 APPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -2
Query: 493 PPPXXXXGEXAXXPXPGXPPPXGXPXXXXXXXPXPXXP 380
PPP P PG PPP G P P P
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Frame = +1
Query: 526 PXXXXXXPXXRGPPXPXXXXXXXXGGXGPXXXGXXXXXXAXXXPPPGGXGPPXXXXXXX- 702
P P PP P G GP A P PG PP
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRG 380
Query: 703 -GGPPP 717
GGPPP
Sbjct: 381 GGGPPP 386
Score = 29.5 bits (63), Expect = 4.2
Identities = 21/91 (23%), Positives = 21/91 (23%)
Frame = -2
Query: 661 GGGXXXPXXXXGXPXXXAPXXPXXXXXXXXXGGXPXXXXXXXXPGGXXXXXXXXXXPPPX 482
G G P P AP P G P P PPP
Sbjct: 315 GAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374
Query: 481 XXXGEXAXXPXPGXPPPXGXPXXXXXXXPXP 389
G G PPP P P P
Sbjct: 375 GAAGRGG-----GGPPPPALPGGPRARGPPP 400
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/69 (28%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Frame = +1
Query: 643 AXXXPPPGGXGPPXXXXXXXGGPPP-----XGGXXPXXGXXXXXXXXPGGPPPXXXXXXR 807
A PPP G PP GPPP G P G P PPP +
Sbjct: 8 APHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQ 67
Query: 808 XXXXXXXGP 834
GP
Sbjct: 68 PQFNFGPGP 76
Score = 29.5 bits (63), Expect = 4.2
Identities = 23/95 (24%), Positives = 25/95 (26%)
Frame = -2
Query: 673 PPPRGGGXXXPXXXXGXPXXXAPXXPXXXXXXXXXGGXPXXXXXXXXPGGXXXXXXXXXX 494
PPP+G P P P P G P P
Sbjct: 42 PPPQGA----PPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPP-----PQMYYQP 92
Query: 493 PPPXXXXGEXAXXPXPGXPPPXGXPXXXXXXXPXP 389
PPP G + P P PPP P P P
Sbjct: 93 PPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPP 127
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = -1
Query: 782 GGPPGXXXXXXXXPXXGXXPP---XGGGPPXXXXXXXGG----PXPPGGG 654
G PPG G PP GGGPP GG P PGGG
Sbjct: 89 GLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGG 138
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = -1
Query: 725 PPXGGGPPXXXXXXXGGPXPPGGGXXXAXXXXXXPXXXGPXPPXXXXXXXXGXGGPR 555
PP GGG P GG PPGGG G G G PR
Sbjct: 91 PPGGGGAP--GPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPR 145
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 658 PPGGXGPPXXXXXXXGGPPPXGG 726
PPG PP G PPP GG
Sbjct: 1201 PPGAPAPPMPPGVPGGPPPPPGG 1223
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.7 bits (61), Expect = 7.3
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 655 PPPGGXGPPXXXXXXXGGPP-PXGGXXPXXGXXXXXXXXPGGPPP 786
PPPG GP G PP P G P G PG PP
Sbjct: 567 PPPGSYGPIPSTPPSSGSPPSPSSGYQPPSG-------QPGASPP 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.154 0.544
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,280,301
Number of Sequences: 37544
Number of extensions: 497312
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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