Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P12
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine rece...    29   3.7  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein275 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 180 FNHTIFR-CYWITFRAASKATFCLILLISFNMADRFEQ--LLRHMTKKQ 43
           F + +F  C+  T   A  ATF  I+LI  NMA+R ++  L RH  K Q
Sbjct: 187 FRYVVFPVCFMTTLMVAESATF--IILIYGNMAERNKKLSLSRHTMKMQ 233


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 502  RVVVKIGRRTVPQKTRKELRGHRDASSA 585
            RV+   GRR+ P  +R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 44  CFFVIWRSSCSNRSAILNEINK 109
           CFFVI+R++    S +LNE+N+
Sbjct: 60  CFFVIYRNNGYRFSGMLNELNR 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,149
Number of Sequences: 27780
Number of extensions: 230155
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)