Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P11
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740...    24   5.9  
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   9.5  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    28   9.5  
01_03_0005 + 11568545-11569119,11569179-11569191                       28   9.5  

>01_05_0552 -
           23173106-23173184,23173266-23173411,23173543-23174022,
           23174106-23174161,23175538-23175637,23175708-23175765,
           23176163-23176278,23176915-23176974,23177297-23177383,
           23178250-23178341,23178409-23178587,23178946-23179087,
           23179655-23179706,23180241-23180473,23180569-23180745,
           23180882-23181044,23181242-23181392,23181493-23181574,
           23182193-23182332,23182499-23183013
          Length = 1035

 Score = 24.2 bits (50), Expect(2) = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 764 GGGGGGGVXXXKXPP 808
           GGGGGGG    + PP
Sbjct: 111 GGGGGGGGGGSQQPP 125



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 740 FFXFFXXXGGGGGGG 784
           F  F    GGGGGGG
Sbjct: 99  FGEFLRGGGGGGGGG 113


>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 171 PKEDNSLNTLAESAKKTIEELREKVE 248
           PKE ++  T+A + +KT EE+R +++
Sbjct: 91  PKESSTATTMAAATEKTAEEIRRELQ 116


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 338
           E A+K  E L+  +K   +L PE +K+ F +++ +F +F   L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 764 GGGGGGGVXXXKXPPPXXXXG 826
           GGGGGGG      PPP    G
Sbjct: 80  GGGGGGGTVMYTSPPPPYSGG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,476,171
Number of Sequences: 37544
Number of extensions: 320430
Number of successful extensions: 4526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4319
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)