Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P10
         (1040 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = +2

Query: 689 PPP---PPXXXXXXXXXXGXFXPPPPPPP 766
           PPP   PP            + PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 685 GXPPPPXXXXSXXXXXXXXXPPPPPPP 765
           G PPPP              PPPPPPP
Sbjct: 759 GGPPPPPPPPG--VAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 685 GXPPPPXXXXSXXXXXXXXXPPPPPPP 765
           G PPPP              PPPPPPP
Sbjct: 7   GNPPPPPPPPG---FEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 691 PPPPXXXXSXXXXXXXXXPPPPPPP 765
           PPP     +         PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
 Frame = +2

Query: 689 PPPPPXXXXXXXXXXGX-----FXPPPPPPP 766
           PPPPP          G        PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 690 PPPPXXXXXXXXXXXXXXPPPPPPP 764
           PPP               PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,985
Number of Sequences: 5004
Number of extensions: 21573
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)