Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P08
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    31   0.30 
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    31   0.30 
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    28   1.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   3.8  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   8.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 490 QLDGHLLTRTFLVTXRITLADVIVFXTLLHAFXHVLXPXVRSSLINXXRWXLTXXHXPXX 669
           + D  L ++T+LV  R+TLAD+     L     +VL     +   +  R+  T  H    
Sbjct: 139 RFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKL 198

Query: 670 SAVXXSL 690
            A+   L
Sbjct: 199 DAITEPL 205


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 514 RTFLVTXRITLADVIVFXTLLHAFXH-VLXPXVRSSLINXXRWXLTXXH 657
           RT+LV  R TLAD + F +LL  F + ++    R  L +  R+ +T  H
Sbjct: 152 RTYLVGDRFTLAD-LFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFH 199


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 271 STFPSALSNAGTFPAGXFFKKXSXLLVSPXTKFXATFHISP-RNXVAAINA 122
           +TFP A +  GTFP G  F   S L              SP  N +AAI A
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGLRTDSLDVTAPAVANSPILNNIAAIRA 102


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 331 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 426
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 282 SNAIAYYVANESLRGGXLATQARVWQWAS 368
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 361 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 468
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,658
Number of Sequences: 5004
Number of extensions: 34013
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)