Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P08
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 77 2e-14
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 70 3e-12
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 40 0.003
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 33 0.24
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 33 0.43
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 32 0.74
03_01_0249 - 1935355-1935827,1936129-1936330 31 0.98
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 30 3.0
11_06_0584 - 25220371-25222917 29 6.9
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 77.0 bits (181), Expect = 2e-14
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Frame = +3
Query: 90 HCIQENXRAYXALIAATXFLGLM*KVAXNFVXGETNKXEXFLKXFPAGKVPAFESADGXV 269
HC N A+ ALIAA + G+ ++ NF G +NK FLK P GK+P E+ +G V
Sbjct: 30 HCGSGNKNAFKALIAAE-YTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAV 88
Query: 270 LLTESNAIAYYVA----NESLRGGXLATQARVWQWASWSDSELLPASCAWVFPYLG 425
ESNAIA YVA N SL G L + + QW +S +E+ W++P LG
Sbjct: 89 F--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLG 142
Score = 36.7 bits (81), Expect = 0.026
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 481 SXXQLDGHLLTRTFLVTXRITLADVIVFXTLLHAFXHVLXPXVRSSLINXXRWXLTXXHX 660
S L+ HL + T+LV +TLAD+++ L + F +L S + R+ T +
Sbjct: 161 SLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQ 220
Query: 661 PXXSAV 678
P V
Sbjct: 221 PNFKKV 226
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 69.7 bits (163), Expect = 3e-12
Identities = 50/137 (36%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Frame = +3
Query: 90 HCIQENXRAYXALIAATXFLGLM*KVAXNFVXGETNKXEXFLKXFPAGKVPAFESADGXV 269
H N A+ ALIAA + G+ ++A NF G +NK +LK P GKVP E+ DG V
Sbjct: 567 HTFDGNKNAFKALIAAE-YSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPV 625
Query: 270 LLTESNAIAYYVANES-------------LRGGXLATQARVWQWASWSDSELLPASCAWV 410
ESNAIA YV + S L G L A + QW +S +E+ + W+
Sbjct: 626 F--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWL 683
Query: 411 FPYLGIMQFNKQNVERA 461
FP LG + + E A
Sbjct: 684 FPRLGFAPYVAVSEEAA 700
Score = 66.9 bits (156), Expect = 2e-11
Identities = 49/137 (35%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Frame = +3
Query: 90 HCIQENXRAYXALIAATXFLGLM*KVAXNFVXGETNKXEXFLKXFPAGKVPAFESADGXV 269
H N A+ ALIAA + G+ ++ NF G +NK FLK P GK+P E+ DG V
Sbjct: 6 HAGSGNKNAFKALIAAE-YSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPV 64
Query: 270 LLTESNAIAYYV-------------ANESLRGGXLATQARVWQWASWSDSELLPASCAWV 410
ESNAIA YV A+ L G L A + QW +S +E+ W+
Sbjct: 65 F--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWL 122
Query: 411 FPYLGIMQFNKQNVERA 461
+P LGI + + E A
Sbjct: 123 YPRLGIAPYVAVSEEAA 139
Score = 34.3 bits (75), Expect = 0.14
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 481 SXXQLDGHLLTRTFLVTXRITLADVIVFXTLLHAFXHVLXPXVRSSLINXXRWXLTXXHX 660
S L+ HL + T+LV +TLAD+++ L F ++ S + R+ T +
Sbjct: 146 SLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQ 205
Query: 661 PXXSAV 678
P V
Sbjct: 206 PNFKKV 211
Score = 34.3 bits (75), Expect = 0.14
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 481 SXXQLDGHLLTRTFLVTXRITLADVIVFXTLLHAFXHVLXPXVRSSLINXXRWXLTXXHX 660
S L+ HL + T+LV +TLAD+++ L F ++ S + R+ T +
Sbjct: 707 SLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQ 766
Query: 661 PXXSAV 678
P V
Sbjct: 767 PNFKKV 772
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 39.9 bits (89), Expect = 0.003
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 165 VAXNFVXGETNKXEXFLKXFPAGKVPAFESADGXVLLTESNAIAYYVAN-----ESLRGG 329
VA + GE N+ L P GK+PAFE DG V L ES AI YV + LR G
Sbjct: 31 VAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYVLRNYNKPDLLREG 87
Query: 330 XLATQARVWQW 362
L A V W
Sbjct: 88 NLEESAMVDMW 98
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 33.5 bits (73), Expect = 0.24
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +1
Query: 493 LDGHLLTRTFLVTXRITLADVIVFXTL 573
LDG+L +RTFLV+ +++AD++V+ L
Sbjct: 102 LDGYLASRTFLVSYGLSIADIVVWSNL 128
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 32.7 bits (71), Expect = 0.43
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 225 PAGKVPAFESADGXVLLTESNAIAYYV----ANESLRGGXLATQARVWQWASWSDSELLP 392
P G+VPAFE DG + L ES AI+ Y+ ++ LR L+ A V W S
Sbjct: 51 PFGQVPAFE--DGDLTLFESRAISKYILRKHGSDLLRESNLSESAMVDVWLEVESSHFDG 108
Query: 393 ASCAWVF 413
A +F
Sbjct: 109 AMSPIIF 115
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 31.9 bits (69), Expect = 0.74
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 493 LDGHLLTRTFLVTXRITLADVIVFXTL 573
+DG+L++RTFLV +T+AD+ V+ L
Sbjct: 100 VDGYLMSRTFLVGHVLTIADITVWSNL 126
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 31.5 bits (68), Expect = 0.98
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 195 NKXEXFLKXFPAGKVPAFESADGXVLLTESNAIAYYVANESLRGGXLATQAR 350
+K FLK P G+VPAF+ D + ES AI Y+ ++ G R
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSGNKTLMGR 91
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 195 NKXEXFLKXFPAGKVPAFESADGXVLLTESNAIAYYV 305
+K L P G+VPAF+ DG ++L ES AI Y+
Sbjct: 41 HKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICRYI 75
>11_06_0584 - 25220371-25222917
Length = 848
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 463 FARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 371
+ +ST C C +PR K +AG S+++D
Sbjct: 408 WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,668
Number of Sequences: 37544
Number of extensions: 268376
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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