Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P07
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...   111   1e-25
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   4.9  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   8.6  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score =  111 bits (268), Expect = 1e-25
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
 Frame = +3

Query: 150 LSGLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 317
           L G+  L  P  NK  A T EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 318 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITI- 494
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 495 -HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLGACGMGIPXGK 632
            +D  ++   L  + ++D V  I++TD E ILG+GD G  G+ I   K
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQGVGGVLISVAK 177



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 628 ANSRSYTALGGIKPHQCLXITIDVGTNXQS 717
           A     T   G+ P++ L I +DVGTN ++
Sbjct: 176 AKGHLMTLCAGLDPNRFLPIVLDVGTNNET 205


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 471 PXGLFITIHDKGHVYDVLKNWPETDVRA 554
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 720 HRLGVXTHVDSDGQTLMRLD 661
           +RLGV  H D+D  TLM  D
Sbjct: 269 NRLGVQEHTDADALTLMSQD 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,167
Number of Sequences: 5004
Number of extensions: 68793
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)