BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P07
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 190 1e-48
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 190 2e-48
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 186 2e-47
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 185 4e-47
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 146 2e-35
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 146 2e-35
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 118 5e-27
08_01_0680 - 5958066-5960253,5960707-5961503 31 1.3
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 31 1.3
08_01_0017 + 132109-132924 31 1.7
02_04_0313 - 21947115-21948021,21948102-21948172 30 3.0
07_03_0999 - 23216665-23217419,23217626-23217956 29 3.9
06_03_0334 - 19660526-19661755 29 3.9
07_01_0920 + 7749937-7750264,7750416-7750546,7751686-7751747,775... 29 5.2
11_04_0444 + 17816207-17817436 29 6.8
05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673 29 6.8
03_06_0416 - 33780911-33781861 29 6.8
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 29 6.8
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 28 9.0
04_04_0812 - 28251775-28252119 28 9.0
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 28 9.0
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 190 bits (463), Expect = 1e-48
Identities = 88/160 (55%), Positives = 114/160 (71%)
Frame = +3
Query: 153 SGLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 332
SG L+ P NKG+A + ER + GLLPP + +QE Q + ++ Y PL +YI
Sbjct: 30 SGYTLLRDPRHNKGLAFSEAERDAHYLRGLLPPSIVSQELQEKKLMHNLRNYTVPLQRYI 89
Query: 333 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITIHDKGHV 512
+M L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G +YRRP GL+I++ DKG +
Sbjct: 90 AMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI 149
Query: 513 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
+VLKNWPE ++ IVVTDGERILGLGDLG GMGIP GK
Sbjct: 150 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 189
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 643 YTALGGIKPHQCLXITIDVGTNXQSMLD 726
YTALGG++P CL ITIDVGTN +S+L+
Sbjct: 193 YTALGGVRPSACLPITIDVGTNNESLLN 220
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 190 bits (462), Expect = 2e-48
Identities = 86/160 (53%), Positives = 118/160 (73%)
Frame = +3
Query: 153 SGLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 332
SG L+ P NKG+A + +ER + GLLPP V +Q+ QV+ ++ +Y PL +Y+
Sbjct: 99 SGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQRYM 158
Query: 333 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITIHDKGHV 512
+M L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G ++R+P GL++++ DKG V
Sbjct: 159 AMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKV 218
Query: 513 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
DVL+NWPE +++ IVVTDGERILGLGDLG GMGIP GK
Sbjct: 219 LDVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGK 258
Score = 45.2 bits (102), Expect = 7e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 643 YTALGGIKPHQCLXITIDVGTNXQSMLD 726
YTALGG++P CL ITIDVGTN + +L+
Sbjct: 262 YTALGGVRPSACLPITIDVGTNNEQLLN 289
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 186 bits (453), Expect = 2e-47
Identities = 85/160 (53%), Positives = 114/160 (71%)
Frame = +3
Query: 153 SGLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 332
SG + L+ P NKG+A ER+ + GLLPP + +QE Q +I +Y+ PL KY+
Sbjct: 53 SGYNLLRDPRYNKGLAFNERERETHYLRGLLPPAIVSQELQERKIMHNIRQYQLPLQKYM 112
Query: 333 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITIHDKGHV 512
+M L + NE LFY+ + DNV E++P+VYTPTVG ACQK+G ++ RP GL+I++ +KG +
Sbjct: 113 AMMDLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKI 172
Query: 513 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
+VLKNWPE ++ IVVTDGERILGLGDLG GMGIP GK
Sbjct: 173 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 212
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 185 bits (451), Expect = 4e-47
Identities = 84/160 (52%), Positives = 117/160 (73%)
Frame = +3
Query: 153 SGLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 332
SG L+ P NKG++ T +ER + GLLPP V +QE Q + ++ +++ PL +Y+
Sbjct: 33 SGHSLLRDPRHNKGLSFTEKERDAHYLRGLLPPVVLSQELQEKRLLQNVRQFQVPLQRYM 92
Query: 333 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITIHDKGHV 512
LM L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G ++RRP GL+I++ +KG +
Sbjct: 93 ALMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRI 152
Query: 513 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
++L+NWPE ++ IVVTDGERILGLGDLG GMGIP GK
Sbjct: 153 LELLRNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGK 192
Score = 44.8 bits (101), Expect = 1e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 643 YTALGGIKPHQCLXITIDVGTNXQSML 723
YTALGG++P CL ITIDVGTN + +L
Sbjct: 196 YTALGGVRPSACLPITIDVGTNNEDLL 222
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 146 bits (355), Expect = 2e-35
Identities = 77/169 (45%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Frame = +3
Query: 156 GLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYEN------- 314
G D L P NK A + ER LG+ GLLPPRV + E+Q + S E+
Sbjct: 46 GTDILHDPWFNKDTAFPMTERDRLGLRGLLPPRVMSFEQQYDRFINSFRSLEHNTRGEPD 105
Query: 315 ---PLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLF 485
L K+ L L DRNE L+YR + DN+ + PI+YTPTVGL C+ + ++RRP G++
Sbjct: 106 TIVALAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGMY 165
Query: 486 ITIHDKGHVYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
+ DKG + ++ NWP V IVVTDG RILGLGDLG G+GIP GK
Sbjct: 166 FSAKDKGEMMSMIYNWPAEKVDMIVVTDGSRILGLGDLGVQGIGIPIGK 214
Score = 32.3 bits (70), Expect = 0.56
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 643 YTALGGIKPHQCLXITIDVGTNXQSMLDXPL 735
Y A GI P + L I +DVGTN +L+ L
Sbjct: 218 YVAAAGINPQKVLPIMLDVGTNNTKLLEDKL 248
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 146 bits (354), Expect = 2e-35
Identities = 61/94 (64%), Positives = 78/94 (82%)
Frame = +3
Query: 351 DRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPXGLFITIHDKGHVYDVLKN 530
+R+E LFY+ + DNV E++P+VYTPTVG ACQK+G +YRRP GL+I++ DKG + +VLKN
Sbjct: 5 ERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEVLKN 64
Query: 531 WPETDVRAIVVTDGERILGLGDLGACGMGIPXGK 632
WPE ++ IV+TDGERILGLGDLG GMGIP GK
Sbjct: 65 WPERSIQVIVITDGERILGLGDLGCQGMGIPVGK 98
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 118 bits (285), Expect = 5e-27
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 9/192 (4%)
Frame = +3
Query: 84 YSEMERDRIGLWGSGDGQPTSGLSGLDH----LKHPGLNKGMAXTIEERQL-LGIHGLLP 248
+S ERDR+GL G S +D LK+ I+ + L L + P
Sbjct: 60 FSMTERDRLGLRGLLPPNVVSSQQQIDRFTPTLKYQYKFHSEIQHIDAKGLALNYLNISP 119
Query: 249 PRVKTQEEQVELCKLSIDRYEN--PLNKYIYLMGLLDRNEHLFYR--FVADNVAEMMPIV 416
++ + V K + D + PL K+ L L DRNE ++Y+ + DN+ E PIV
Sbjct: 120 AICESSQYCVNADKYARDGPSDTYPLAKWRILNRLHDRNETMYYKAEVLIDNIEEHAPIV 179
Query: 417 YTPTVGLACQKFGLVYRRPXGLFITIHDKGHVYDVLKNWPETDVRAIVVTDGERILGLGD 596
YTPTVGL CQ + ++RRP G++ + D+G + ++ NWP V IVVTDG RILGLGD
Sbjct: 180 YTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGD 239
Query: 597 LGACGMGIPXGK 632
LG G+GI GK
Sbjct: 240 LGVHGIGIAIGK 251
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 156 GLDHLKHPGLNKGMAXTIEERQLLGIHGLLPPRVKTQEEQVE 281
G D L P N+G ++ ER LG+ GLLPP V + ++Q++
Sbjct: 45 GSDILHDPWFNRGTGFSMTERDRLGLRGLLPPNVVSSQQQID 86
Score = 35.9 bits (79), Expect = 0.045
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 643 YTALGGIKPHQCLXITIDVGTNXQSMLDXPL 735
Y A GI P + L + IDVGTN + +L PL
Sbjct: 255 YVAAAGINPQRVLPVMIDVGTNNEKLLKDPL 285
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 51 VSNATSGRKCTYSEMERDRIGLWGSGDGQPTSGLSGLDHLKHPGL 185
++N + K Y E R+ IG WGSG G+ + HL + L
Sbjct: 372 LANQPAPHKKEYWESIRNSIGTWGSGTNPTLEGMRQILHLSYKDL 416
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 193 PLLRPGCLRWSRPERPL--VGCPSPEPHNPIRSRSIS 89
PL PGC R R R L + PSP P + RS+S+S
Sbjct: 22 PLRSPGCRRRRRRGRVLSALSSPSPSPSSASRSQSVS 58
>08_01_0017 + 132109-132924
Length = 271
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 328 YLLSGFSYLSIESLHSSTCSSC 263
YL +GFS+ S +S HSSTCS C
Sbjct: 84 YLSAGFSFASRDS-HSSTCSCC 104
>02_04_0313 - 21947115-21948021,21948102-21948172
Length = 325
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = +2
Query: 506 TCIRCS*ELAGDGRPCHCCNRRRTYSGSGRLGRMRDGHPXGQTRAPTPRSEASSRISVXP 685
T + S E G G CC + SGSGRL MR G R P + S+ P
Sbjct: 267 TTTQSSKEKQGSGGDSACCGKAP--SGSGRLHHMRRSFSGGGGRRSLPSRHGRTSSSMLP 324
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 627 PXGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 529
P G PS +P R P + + Q+++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGS 83
>06_03_0334 - 19660526-19661755
Length = 409
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 627 PXGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 529
P G PS +P R P + + Q+++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGS 83
>07_01_0920 +
7749937-7750264,7750416-7750546,7751686-7751747,
7752007-7752070
Length = 194
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 617 HPXGQTRA--PTPRSEASSRISVXPSLSTWVXTPS 715
HP G R+ P P +SS + S+S W+ TPS
Sbjct: 65 HPEGHARSYSPIPSVFSSSNQPILCSISPWIWTPS 99
>11_04_0444 + 17816207-17817436
Length = 409
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 627 PXGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 529
P G PS +P R P + + Q ++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGS 83
>05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673
Length = 337
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -3
Query: 621 GCPSRMRPSRPDPEYVLRRLQQWHGRPSPASS*EHR----IHVPYRG 493
G R+ S DP V+ + H PSP S HR +HV RG
Sbjct: 219 GVKKRVERSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARG 265
>03_06_0416 - 33780911-33781861
Length = 316
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 483 RGPLVGGTQARTSDRPGQPSECTQLASFQPRYPRRNGRTDAHCGPRAP 340
R P GGT +R + P P+ P P R GR PRAP
Sbjct: 17 RSPTAGGTPSRLAVAPPSPTTPQCAIPASPHTPGR-GRAPPPATPRAP 63
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 57 NATSGRKCTYSEMERDRIGLWGSGDGQPTS-GLSGLDHLKHP 179
NA GRK Y R +I SG G +S SG DH+ P
Sbjct: 317 NAKGGRKGRYKSQGRGQIQQNTSGQGHVSSPATSGSDHVNKP 358
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 657 SERGVGARVCPXGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 529
++R V P R +PS P +YV RRL + P PA+
Sbjct: 294 AKRARALSVSPKTTAKRAKPSPPPSDYVRRRLLEPPRPPPPAA 336
>04_04_0812 - 28251775-28252119
Length = 114
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 536 GDGRPCHCCNRRRTYSGSGRLGRMRDGHPXGQTRAPTP 649
GDG C C R G GR MR+ P R P
Sbjct: 59 GDGGGCDGCGRGGGCDGCGRYPPMREDEPRSWVRIVAP 96
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 536 GDGRPCHCCNRRRTYSGSGRLGR-MRDGHPXGQTRAPTPRSEASSRI 673
GD P C RR G R GR + +G+ G R+P PRS S+R+
Sbjct: 43 GDSDP-RCEADRRRDGGRSRGGRELSNGY--GHRRSPPPRSRLSARL 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,800,070
Number of Sequences: 37544
Number of extensions: 568607
Number of successful extensions: 1629
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -