Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P06
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    29   0.93 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.7  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   6.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.5  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   6.5  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   6.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   8.6  

>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +2

Query: 341 DVIKELLENHFQESKTKIA--PHALMLLADVAKCLVTETCLRAVKQA-QREGSNKVDVEH 511
           DV  E ++N  Q++ T+ A     L LL D  K +  E+   ++K+  +R    + DVE 
Sbjct: 229 DVPIESIQNALQQTGTEYANLTEKLTLLLDTIKDV--ESYAHSLKELLKRRDQKQQDVEA 286

Query: 512 IEKCLPQLMLDFP*INKDATNGMSI 586
           +++   +L L+   I+   +NG S+
Sbjct: 287 LQEYSAKLSLERDKISSGGSNGFSL 311


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 390 LVLLSWKWFSNSSFITSFLIVLFTL 316
           +++  ++WF+N SFIT ++ + F L
Sbjct: 52  VIVKFYRWFNNLSFITRWITIWFPL 76


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 263 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 394
           ++R    N   +   +   +  T+ ++V KEL+EN HF E  T I
Sbjct: 26  LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 402 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 304
           C A+LV++S  W + +   F+TSFL+   T+  K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 727 VSRSFLPHII--QLWNELPSSLFREL*HVL-LQMXVGVEYLTVGTAW 858
           +S  F P I   Q+WN +  S++RE  H+L L+   G+ Y  VG+ +
Sbjct: 715 LSTEFKPKIYVGQIWNSIMISMYRE--HLLSLEHLKGLLYQQVGSEY 759


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +2

Query: 290 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALMLLADVAKCL----VTETC 454
           N D   L  N KS   + +   LL  NHF ++ +K +PH  +L            V  T 
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTN 176

Query: 455 LRAVKQA---QREGSNKVDVEH 511
           + +VK+     R     +D+ H
Sbjct: 177 INSVKRVLLLNRRDDGYIDLRH 198


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 323 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETCLRAVKQAQREGSNK 496
           K T+  + + ELLE   Q +K    P  + +L D    LVT    + V  A   GS+K
Sbjct: 54  KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVTH-MPQLVANANFYGSSK 110


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 554 FKGSPASAGVNISQYVLHQLC 492
           ++ SP +  +N+SQ  LHQ C
Sbjct: 433 YEASPRAKSLNLSQVSLHQAC 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,305
Number of Sequences: 5004
Number of extensions: 69393
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)