Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P03
(952 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2; Culicida... 173 7e-42
UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to pseudourid... 171 2e-41
UniRef50_Q9W282 Cluster: Pseudouridylate synthase; n=2; Sophopho... 165 1e-39
UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;... 165 2e-39
UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep... 137 3e-31
UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19; Eu... 136 1e-30
UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32, pa... 132 1e-29
UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3; Tetraodo... 132 1e-29
UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:... 128 2e-28
UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella ve... 124 4e-27
UniRef50_A2EY58 Cluster: Pseudouridylate synthase; n=1; Trichomo... 107 5e-22
UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5; Sac... 103 5e-21
UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4; Saccharo... 100 1e-19
UniRef50_Q011R7 Cluster: Exopolyphosphatases and related protein... 99 1e-19
UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahym... 94 5e-18
UniRef50_Q54I97 Cluster: Pseudouridylate synthase; n=1; Dictyost... 93 1e-17
UniRef50_Q6C194 Cluster: Pseudouridylate synthase; n=1; Yarrowia... 93 1e-17
UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase ta... 91 3e-17
UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4; Saccharo... 89 1e-16
UniRef50_UPI000049A0B0 Cluster: pseudouridine synthase; n=1; Ent... 89 2e-16
UniRef50_Q9C5K6 Cluster: Pseudouridylate synthase; n=3; core eud... 87 6e-16
UniRef50_Q583N7 Cluster: Pseudouridylate synthase; n=1; Trypanos... 85 3e-15
UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1; Schizosa... 81 3e-14
UniRef50_Q8X025 Cluster: Related to pseudouridine synthase 3; n=... 62 3e-14
UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5; Trypanos... 80 7e-14
UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Parameci... 79 2e-13
UniRef50_Q75M65 Cluster: Pseudouridylate synthase; n=2; Oryza sa... 77 7e-13
UniRef50_Q4P5K5 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_Q5KC13 Cluster: Pseudouridylate synthase, putative; n=2... 68 3e-10
UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tR... 68 3e-10
UniRef50_Q2GVZ0 Cluster: Putative uncharacterized protein; n=1; ... 67 5e-10
UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lambl... 65 2e-09
UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultur... 63 1e-08
UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1; ... 62 2e-08
UniRef50_A6RN06 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_A4R2D6 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_Q4WYK4 Cluster: Pseudouridylate synthase 3; n=6; Euroti... 61 5e-08
UniRef50_A7ANH8 Cluster: tRNA pseudouridine synthase A family pr... 60 6e-08
UniRef50_A7F2S8 Cluster: Putative uncharacterized protein; n=1; ... 60 6e-08
UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5; Arc... 59 2e-07
UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genom... 55 2e-06
UniRef50_A6R922 Cluster: Putative uncharacterized protein; n=1; ... 54 7e-06
UniRef50_Q5CV63 Cluster: Pseudouridylate synthase; n=2; Cryptosp... 53 9e-06
UniRef50_Q0URV4 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1; Methanos... 52 2e-05
UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1; Can... 52 3e-05
UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Parameci... 51 4e-05
UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1; Met... 51 5e-05
UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family prot... 50 1e-04
UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n... 49 2e-04
UniRef50_Q8SQS9 Cluster: TRNA PSEUDOURIDINE SYNTHASE A; n=1; Enc... 48 4e-04
UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2... 47 6e-04
UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29; Eu... 46 0.001
UniRef50_UPI00015B411C Cluster: PREDICTED: similar to pseudourid... 46 0.002
UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;... 46 0.002
UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2; unclassi... 45 0.003
UniRef50_Q5BT54 Cluster: SJCHGC02715 protein; n=1; Schistosoma j... 45 0.003
UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;... 44 0.004
UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole... 44 0.004
UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4; Clostrid... 44 0.004
UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1; Glo... 44 0.006
UniRef50_Q7NAQ9 Cluster: tRNA pseudouridine synthase A; n=1; Myc... 44 0.008
UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1... 43 0.013
UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2; Bacteria... 43 0.013
UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 42 0.017
UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family prot... 42 0.017
UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1; Methanob... 42 0.017
UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1; Methanos... 42 0.023
UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1; ... 42 0.030
UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus n... 42 0.030
UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4; The... 41 0.040
UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1; ... 40 0.070
UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4; ... 40 0.093
UniRef50_Q6AKP0 Cluster: tRNA pseudouridine synthase A 2; n=2; P... 40 0.093
UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis thal... 40 0.12
UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1; Carboxyd... 39 0.16
UniRef50_Q7S319 Cluster: Putative uncharacterized protein NCU075... 39 0.21
UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1; Yar... 39 0.21
UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1; Sch... 39 0.21
UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces cere... 38 0.28
UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2; ... 38 0.28
UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1; Arc... 38 0.28
UniRef50_Q7QX52 Cluster: Pseudouridylate synthase; n=1; Giardia ... 38 0.38
UniRef50_Q8GB97 Cluster: Pseudouridylate synthase; n=2; Clostrid... 38 0.50
UniRef50_A4WC19 Cluster: Acyltransferase 3; n=1; Enterobacter sp... 38 0.50
UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.50
UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1; Methanos... 38 0.50
UniRef50_A7HKV8 Cluster: tRNA pseudouridine synthase A; n=1; Fer... 37 0.66
UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA ... 37 0.66
UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein; ... 37 0.66
UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole geno... 37 0.87
UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7; Sac... 37 0.87
UniRef50_Q1Q1P7 Cluster: Pseudouridylate synthase; n=1; Candidat... 36 1.1
UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3; Clostrid... 36 1.1
UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1; Sch... 36 1.1
UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2; Ost... 36 1.5
UniRef50_Q61UB2 Cluster: Putative uncharacterized protein CBG053... 36 1.5
UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1; Dic... 36 1.5
UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3; ... 36 1.5
UniRef50_A2E6F9 Cluster: tRNA pseudouridine synthase family prot... 36 2.0
UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42; La... 36 2.0
UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3; ... 32 2.3
UniRef50_Q1MM77 Cluster: Pseudouridylate synthase; n=13; Alphapr... 35 2.6
UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1; Syntroph... 35 2.6
UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultur... 35 2.6
UniRef50_A2FDS7 Cluster: tRNA pseudouridine synthase family prot... 35 3.5
UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3; Bor... 35 3.5
UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1; C... 35 3.5
UniRef50_Q74L59 Cluster: tRNA pseudouridine synthase A; n=18; Ba... 34 4.6
UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2; Des... 34 4.6
UniRef50_Q4Y148 Cluster: Putative uncharacterized protein; n=5; ... 34 6.1
UniRef50_Q8GPE5 Cluster: Eps4O; n=2; Streptococcus|Rep: Eps4O - ... 33 8.1
UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2; Desulfit... 33 8.1
UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2; Acidobac... 33 8.1
UniRef50_A6FXP9 Cluster: Pseudouridylate synthase; n=1; Plesiocy... 33 8.1
UniRef50_Q8I0W4 Cluster: TRNA pseudouridine synthase, putative; ... 33 8.1
UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1; Haloquad... 33 8.1
UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1; Halor... 33 8.1
UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3; Hal... 33 8.1
>UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2;
Culicidae|Rep: Pseudouridylate synthase - Aedes aegypti
(Yellowfever mosquito)
Length = 467
Score = 173 bits (420), Expect = 7e-42
Identities = 77/130 (59%), Positives = 98/130 (75%)
Frame = +1
Query: 322 DGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACL 501
D K QR+F F CH RH+LLR YLGW+YQG A QE++ +T+E+ LF AL R CL
Sbjct: 54 DEPKSNDKKQRKFDFASCHKRHILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRVCL 113
Query: 502 IQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLP 681
I++RETSNYHRCGRTDKGVS+F QV+S+ +RSK +PE Q +P I NEI Y +LLNR+LP
Sbjct: 114 IENRETSNYHRCGRTDKGVSAFHQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLP 173
Query: 682 KHIKVIAWMP 711
+ I+ +AWMP
Sbjct: 174 QDIRCVAWMP 183
Score = 41.9 bits (94), Expect = 0.023
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +3
Query: 192 KINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINK 308
K + TREEL + +LV++I+QL++ N QLKNII K
Sbjct: 9 KKTKRHTREELTAFTQQELVDRIVQLESQNFQLKNIIQK 47
>UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 421
Score = 171 bits (416), Expect = 2e-41
Identities = 79/139 (56%), Positives = 107/139 (76%), Gaps = 3/139 (2%)
Frame = +1
Query: 304 IKQRLGDGQKQK-KVDQ--REFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHL 474
I++RLG +K+K KV ++F F KCH RH+ L+ YLGW+YQG A QE+TT T+EY+L
Sbjct: 42 IEKRLGTAEKKKEKVSSTNKKFDFAKCHKRHIFLKFYYLGWDYQGFAAQEDTTSTIEYYL 101
Query: 475 FEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPY 654
F AL ++CLI+SRETSNYHRCGRTDKGVS+F QVIS+ +RS+ PE+Q+ + +E+ Y
Sbjct: 102 FAALTKSCLIESRETSNYHRCGRTDKGVSAFSQVISLDIRSRLEPEKQDN---LSDELHY 158
Query: 655 SKLLNRLLPKHIKVIAWMP 711
K+LNRLLPK+I+ +W P
Sbjct: 159 CKMLNRLLPKNIRCFSWSP 177
Score = 51.2 bits (117), Expect = 4e-05
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +3
Query: 168 MEKLPPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINK 308
M K+ K+KI TREEL +LDK +L+++I+QL+AHN QLK II K
Sbjct: 1 MAKVVKKKKI---LTREELEQLDKTELIDRILQLEAHNLQLKQIIEK 44
>UniRef50_Q9W282 Cluster: Pseudouridylate synthase; n=2;
Sophophora|Rep: Pseudouridylate synthase - Drosophila
melanogaster (Fruit fly)
Length = 499
Score = 165 bits (401), Expect = 1e-39
Identities = 74/122 (60%), Positives = 93/122 (76%)
Frame = +1
Query: 352 REFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYH 531
R+F + H RHVLL+++Y GW+YQG A QE++ T+E +LF AL R CLI+SR TSNYH
Sbjct: 89 RKFDWSSAHKRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYH 148
Query: 532 RCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMP 711
RCGRTDK VS+F QVISI LRSKH PE Q P+ + +EI Y LLNR+LPK+I+ +AWMP
Sbjct: 149 RCGRTDKEVSAFCQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLPKNIQCVAWMP 208
Query: 712 YR 717
R
Sbjct: 209 LR 210
Score = 40.7 bits (91), Expect = 0.053
Identities = 16/36 (44%), Positives = 28/36 (77%)
Frame = +3
Query: 201 RNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINK 308
+ +RE L KL + +L++K+IQL+A+N QL+N++ K
Sbjct: 16 KGLSREALEKLTQTELIDKVIQLEAYNFQLRNLLQK 51
>UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG3045-PA
- Apis mellifera
Length = 406
Score = 165 bits (400), Expect = 2e-39
Identities = 74/121 (61%), Positives = 94/121 (77%)
Frame = +1
Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNY 528
Q+ F F KC+ RH+LL+ YLGW+Y G VQE+ T+E HLFEAL ++C I+SRETSNY
Sbjct: 50 QKPFDFSKCNKRHILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKSCCIESRETSNY 109
Query: 529 HRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWM 708
HRCGRTDKGVSSF QVIS+ +RSK +PE+Q K + +E+PY K+LNRLLP +I+ IAW
Sbjct: 110 HRCGRTDKGVSSFSQVISLDIRSKLNPEDQYK---LEDELPYCKILNRLLPSNIRCIAWC 166
Query: 709 P 711
P
Sbjct: 167 P 167
Score = 37.9 bits (84), Expect = 0.38
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 186 KQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKN--IINKT-APW*WPKAEK 341
K K +EEL L K++L+E+I+ L+ N QLKN II K+ P+ + K K
Sbjct: 6 KDKTQETLQKEELQLLTKSELIERIVNLEKENKQLKNKDIIRKSQKPFDFSKCNK 60
>UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep:
Zgc:56653 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 386
Score = 137 bits (332), Expect = 3e-31
Identities = 73/140 (52%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Frame = +1
Query: 319 GDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRAC 498
G QK+++V+ + F F RHV LR++YLGW+YQG AVQENT TVE LFEAL +
Sbjct: 38 GSRQKKQRVE-KPFDFSAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTK 96
Query: 499 LIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKH--------SPEEQN-KPSCIRNEIP 651
LIQ R+TS YHRCGRTDKGVS+F QVISI LRS P + + K +E+P
Sbjct: 97 LIQDRQTSCYHRCGRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELP 156
Query: 652 YSKLLNRLLPKHIKVIAWMP 711
Y K+LNR+LP+ I+++ W P
Sbjct: 157 YVKILNRVLPQDIRILQWAP 176
>UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19;
Euteleostomi|Rep: tRNA pseudouridine synthase 3 - Homo
sapiens (Human)
Length = 481
Score = 136 bits (328), Expect = 1e-30
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 7/128 (5%)
Frame = +1
Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNY 528
+R F F RHV LR++Y+GW YQG A QENT T+E LFEAL + L++SR+TSNY
Sbjct: 52 KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNY 111
Query: 529 HRCGRTDKGVSSFGQVISICLRSK----HSPEEQN---KPSCIRNEIPYSKLLNRLLPKH 687
HRCGRTDKGVS+FGQVIS+ LRS+ E+ N + + EI Y+ +LNR+LP
Sbjct: 112 HRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPD 171
Query: 688 IKVIAWMP 711
I+++AW P
Sbjct: 172 IRILAWAP 179
>UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32,
partial; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to FKSG32, partial -
Strongylocentrotus purpuratus
Length = 224
Score = 132 bits (319), Expect = 1e-29
Identities = 68/137 (49%), Positives = 89/137 (64%), Gaps = 10/137 (7%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQS 510
K K+ R F F+K + RHV L+++YLGW+Y G VQE++ TVE+HLFEAL + LI+S
Sbjct: 47 KSSKIP-RPFDFKKYNTRHVALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKLIES 105
Query: 511 RETSNYHRCGRTDKGVSSFGQVISICLRS----------KHSPEEQNKPSCIRNEIPYSK 660
R+TSNY RCGRTDKGVS+FGQVI+I LR+ + + EI Y
Sbjct: 106 RQTSNYSRCGRTDKGVSAFGQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPL 165
Query: 661 LLNRLLPKHIKVIAWMP 711
+LNR+LP I+VIAW P
Sbjct: 166 MLNRVLPSEIRVIAWTP 182
>UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3;
Tetraodontidae|Rep: Pseudouridylate synthase - Tetraodon
nigroviridis (Green puffer)
Length = 412
Score = 132 bits (319), Expect = 1e-29
Identities = 71/137 (51%), Positives = 85/137 (62%), Gaps = 11/137 (8%)
Frame = +1
Query: 334 QKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSR 513
+K V R F RHV LR++YLGW YQG AVQENT TVE LFEAL + CLIQ R
Sbjct: 57 KKAVKNRPLDFFAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDR 116
Query: 514 ETSNYHRCGRTDKGVSSFGQVISICLRSKH--------SPEE---QNKPSCIRNEIPYSK 660
++SNYHRCGRTDKGVS+F QVI+I RS PE K +E+PY K
Sbjct: 117 QSSNYHRCGRTDKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVK 176
Query: 661 LLNRLLPKHIKVIAWMP 711
+LNR+LP I++ W P
Sbjct: 177 MLNRVLPHDIRIWNWAP 193
>UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:
LOC100101318 protein - Xenopus laevis (African clawed
frog)
Length = 507
Score = 128 bits (309), Expect = 2e-28
Identities = 67/127 (52%), Positives = 84/127 (66%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQS 510
KQK+ QR F F RHV LR++YLGW YQG A QENT TVE +F AL + L++S
Sbjct: 42 KQKERPQRAFDFSAHPKRHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLVES 101
Query: 511 RETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHI 690
R+TSNYHRCGRTD+GVS+ QVIS+ LR + KP EI Y +LNR+LP I
Sbjct: 102 RQTSNYHRCGRTDRGVSALAQVISLDLRC----SAEGKP-----EIRYVHILNRVLPPDI 152
Query: 691 KVIAWMP 711
+V++W P
Sbjct: 153 RVLSWAP 159
>UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 464
Score = 124 bits (298), Expect = 4e-27
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 12/140 (8%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQ 507
++ K ++EF F + + R + LR+SYLGW+ G A QE TVE HLF+AL +ACL++
Sbjct: 62 KRAKSKPRKEFDFSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVK 121
Query: 508 SRETSNYHRCGRTDKGVSSFGQVIS------------ICLRSKHSPEEQNKPSCIRNEIP 651
SRE+ +Y RCGRTDKGVS+FGQVIS + LR + S K ++ EI
Sbjct: 122 SRESCSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMK-EIL 180
Query: 652 YSKLLNRLLPKHIKVIAWMP 711
Y +LN++LPK I+V+AW P
Sbjct: 181 YVDILNKVLPKEIRVLAWAP 200
>UniRef50_A2EY58 Cluster: Pseudouridylate synthase; n=1; Trichomonas
vaginalis G3|Rep: Pseudouridylate synthase - Trichomonas
vaginalis G3
Length = 353
Score = 107 bits (256), Expect = 5e-22
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Frame = +1
Query: 337 KKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRE 516
K ++EF +++ H R + LR++Y+GW +G +Q +T +TVEYH+FEALKRA LI++
Sbjct: 5 KPKTKKEFSWDQYHERQIALRIAYIGWNLKGFVLQNDTNETVEYHIFEALKRAKLIRNEN 64
Query: 517 TSNYHRCGRTDKGVSSFGQVISICLRS------KHSPEEQNKPSCIRNEIPYSKLLNRLL 678
NY CGRTD GVS G VIS+ +RS P E K + E+ Y+++LN +L
Sbjct: 65 ECNYSLCGRTDAGVSGVGNVISVRVRSVCPTGLGSIPREGAKVQ--KEEMNYAQILNGIL 122
Query: 679 PKHIKV 696
P I+V
Sbjct: 123 PPSIRV 128
>UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5;
Saccharomycetales|Rep: tRNA pseudouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 442
Score = 103 bits (248), Expect = 5e-21
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLI 504
K KK ++ F F K + R + LR +YLGW Y GLAVQ+ T TVE + EA+ + L+
Sbjct: 76 KAKKAPKK-FDFSKHNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLV 134
Query: 505 QSRETSNYH--RCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLL 678
S +Y RCGRTDKGVS+ QVIS+ +RS + EEQ P+ EIPY +LN+LL
Sbjct: 135 PSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLL 194
Query: 679 PKHIKVIA 702
P I++ A
Sbjct: 195 PDDIRISA 202
>UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetales|Rep: Pseudouridylate synthase -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 491
Score = 99.5 bits (237), Expect = 1e-19
Identities = 56/127 (44%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLI 504
K K ++EF + K + R V ++ +YLGW Y GLA Q + T TVE + +AL + LI
Sbjct: 112 KAKAKKRKEFDWSKQNMRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLI 171
Query: 505 QSR-ETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLP 681
+ E Y +CGRTDKGVS+ QVISI LRS +P+EQ P+ E+ Y ++N LP
Sbjct: 172 REPIEEVEYSKCGRTDKGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLP 231
Query: 682 KHIKVIA 702
IKV A
Sbjct: 232 ADIKVHA 238
>UniRef50_Q011R7 Cluster: Exopolyphosphatases and related proteins;
n=3; Ostreococcus|Rep: Exopolyphosphatases and related
proteins - Ostreococcus tauri
Length = 813
Score = 99.1 bits (236), Expect = 1e-19
Identities = 56/134 (41%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQ--ENTTQTVEYHLFEALKRACL 501
++ K D R F F R + L+V+YLGW Y+G A Q E TT TVE+ LFEAL + L
Sbjct: 436 RRAKTSDARAFDFAARPSRAIALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRL 495
Query: 502 IQSR----ETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLN 669
+ + +T++Y RCGRTD+GVS GQ++++ +RS N S R E+ Y LLN
Sbjct: 496 VAAAADVFKTASYARCGRTDRGVSGLGQIVTLQVRS-------NGASDPREELDYVGLLN 548
Query: 670 RLLPKHIKVIAWMP 711
R LP ++ + W P
Sbjct: 549 RALPSDVRALGWAP 562
>UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahymena
thermophila SB210|Rep: Pseudouridylate synthase -
Tetrahymena thermophila SB210
Length = 481
Score = 93.9 bits (223), Expect = 5e-18
Identities = 44/90 (48%), Positives = 65/90 (72%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQ 507
++QK+ +++E +FE +H L++SY+G YQGLA Q+ T TVE LF+AL++ LI+
Sbjct: 94 KEQKQNNKKESLFEIYQQQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTLIK 153
Query: 508 SRETSNYHRCGRTDKGVSSFGQVISICLRS 597
+R+ N+ R GRTDKGVS+ GQVI I LR+
Sbjct: 154 NRDNCNFTRSGRTDKGVSALGQVIGITLRT 183
>UniRef50_Q54I97 Cluster: Pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: Pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 491
Score = 92.7 bits (220), Expect = 1e-17
Identities = 41/102 (40%), Positives = 67/102 (65%)
Frame = +1
Query: 292 KTS*IKQRLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYH 471
K + ++ G +K+ + Q F+KC+ RHV ++SY+GW + G A Q+ + +T+E +
Sbjct: 55 KNNGVENTEGKKKKKNRNKQSNINFDKCYKRHVAFKLSYVGWPFFGFAAQDCSEETIENY 114
Query: 472 LFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRS 597
L +A + LI +T+NY + GRTDKGVS++GQVIS+ +RS
Sbjct: 115 LIKAFLKTSLIPDIKTANYFKSGRTDKGVSAYGQVISLYVRS 156
Score = 35.1 bits (77), Expect = 2.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 643 EIPYSKLLNRLLPKHIKVIAWMP 711
E+PY K+LN +LP I+++AW P
Sbjct: 208 ELPYIKMLNGVLPPEIRILAWAP 230
>UniRef50_Q6C194 Cluster: Pseudouridylate synthase; n=1; Yarrowia
lipolytica|Rep: Pseudouridylate synthase - Yarrowia
lipolytica (Candida lipolytica)
Length = 443
Score = 92.7 bits (220), Expect = 1e-17
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQSRETS---NYHRCGRT 546
R + +R SYLGW Y GLAVQ T T+E + A++R LI + ++ RCGRT
Sbjct: 84 RKIAIRFSYLGWNYGGLAVQHEDTPLPTIEGTILSAMQRCRLIPESASLFDLDFSRCGRT 143
Query: 547 DKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKV 696
D+GVS+F QVI++ +RSK SPEEQ + E+ Y +LN+LLP I++
Sbjct: 144 DRGVSAFSQVIALKVRSKLSPEEQQDAANDNKELNYIHILNQLLPPDIRI 193
>UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase
tag-124; n=2; Caenorhabditis|Rep: Probable tRNA
pseudouridine synthase tag-124 - Caenorhabditis elegans
Length = 402
Score = 91.5 bits (217), Expect = 3e-17
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQS 510
K KK +F+ R + ++ YLGWE+ GL Q +T TVE H+ +AL + LI+
Sbjct: 15 KSKKAKTLDFLAHP--RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIED 72
Query: 511 RETSNYHRCGRTDKGVSSFGQVISICLRS----------KHSPEEQNKP--SCIRNEIPY 654
++ RCGRTDKGVS+F Q ++ +RS S +E K E+PY
Sbjct: 73 WTKCDFSRCGRTDKGVSAFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPY 132
Query: 655 SKLLNRLLPKHIKVIAWMP 711
K+LN +LPK I+V AW P
Sbjct: 133 VKMLNGVLPKTIRVFAWAP 151
>UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetaceae|Rep: Pseudouridylate synthase -
Pichia stipitis (Yeast)
Length = 465
Score = 89.4 bits (212), Expect = 1e-16
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Frame = +1
Query: 322 DGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA 495
D + +KK R F K + R + L+ +YLGW Y GLA Q T TVE + +AL +
Sbjct: 69 DIRSKKKKKVRTFDMNKYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMS 128
Query: 496 CLIQ--SRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLN 669
LI + + + RCGRTDKGVS+ QVIS+ +RS + EEQ EI Y ++N
Sbjct: 129 RLITEPTPDKCKFSRCGRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIIN 188
Query: 670 RLLPKHIKVIA 702
LLP I++ A
Sbjct: 189 ALLPPDIRMTA 199
>UniRef50_UPI000049A0B0 Cluster: pseudouridine synthase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: pseudouridine
synthase - Entamoeba histolytica HM-1:IMSS
Length = 366
Score = 88.6 bits (210), Expect = 2e-16
Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 12/131 (9%)
Frame = +1
Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLA------VQENTTQ------TVEYHLFEALKR 492
++EF F RH+ +R++Y+G +Y G+ V + T T+EY LF+AL +
Sbjct: 25 KKEFSFNNYKTRHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFK 84
Query: 493 ACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNR 672
LIQ+ + Y+RCGRTDKGVS+FGQV+ + +RS + +E + E+ Y ++LN
Sbjct: 85 TRLIQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRS-NLKDETILYTKREGELDYCRMLNG 143
Query: 673 LLPKHIKVIAW 705
LLP I+ + W
Sbjct: 144 LLPTDIRCLGW 154
>UniRef50_Q9C5K6 Cluster: Pseudouridylate synthase; n=3; core
eudicotyledons|Rep: Pseudouridylate synthase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 446
Score = 87.0 bits (206), Expect = 6e-16
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 7/135 (5%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLI 504
++ +K D+ R+V L++ Y G + G + + ++E +F+AL+R L+
Sbjct: 72 RRVRKGDKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLV 131
Query: 505 QSRETSNYHRCGRTDKGVSSFGQVISICLRSK-HSPEEQNKPSC-----IRNEIPYSKLL 666
++ S Y RCGRTDKGVSS GQVI++ LRS+ SP +K R E Y ++L
Sbjct: 132 GDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVL 191
Query: 667 NRLLPKHIKVIAWMP 711
NR LP I+VI W P
Sbjct: 192 NRALPDDIRVIGWSP 206
>UniRef50_Q583N7 Cluster: Pseudouridylate synthase; n=1; Trypanosoma
brucei|Rep: Pseudouridylate synthase - Trypanosoma
brucei
Length = 428
Score = 84.6 bits (200), Expect = 3e-15
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Frame = +1
Query: 319 GDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRAC 498
G+ + + + +R+F F R + LR++Y G Y GL Q T TVE +L AL+R
Sbjct: 4 GNTEGKPRSKERQFDFSSYPSRKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLR 63
Query: 499 LIQSRETSNYHRCGRTDKGVSSFGQVISICLR-SKHSPEEQNKPSCIRNEIPYSKLLNRL 675
++ ++ RCGRTDKGVS+ G V+S R S + +EQ +P + Y + LN +
Sbjct: 64 FVEPSGPKDFSRCGRTDKGVSALGNVVSFTSRASSWATDEQQQP-----PLDYCEKLNNV 118
Query: 676 LPKHIKVIAW 705
LP I+++ W
Sbjct: 119 LPPTIRIVGW 128
>UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1;
Schizosaccharomyces pombe|Rep: Pseudouridylate synthase
- Schizosaccharomyces pombe (Fission yeast)
Length = 450
Score = 81.4 bits (192), Expect = 3e-14
Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = +1
Query: 352 REFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQSRETSN 525
R F EK + V + +Y GW Y GLA Q T TVE +FEAL RA LI + +
Sbjct: 84 RPFQLEKTVF--VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCS 141
Query: 526 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 705
+ RCGRTDKGVS+ GQVIS+ +R HS R I Y +LNRLLP I++ +
Sbjct: 142 FSRCGRTDKGVSAMGQVISLNVR--HSE---------RRPIIYCDVLNRLLPADIRITGY 190
>UniRef50_Q8X025 Cluster: Related to pseudouridine synthase 3; n=2;
Neurospora crassa|Rep: Related to pseudouridine synthase
3 - Neurospora crassa
Length = 669
Score = 62.1 bits (144), Expect(2) = 3e-14
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ-TVEYHLFEALKRACLIQ 507
++KK +F K R + L+ +YLG Y G Q + ++E L++AL ++CLI
Sbjct: 123 EKKKKKAAKFDPGKYSTRLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIF 182
Query: 508 SRETSN-------YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNE 645
Y +CGRTD+GVS+FGQVI I +RS + P + +P NE
Sbjct: 183 PERPDEVDFGPWEYSKCGRTDRGVSAFGQVIGIRVRS-NKPLPKEEPEQTGNE 234
Score = 39.5 bits (88), Expect(2) = 3e-14
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 634 IRNEIPYSKLLNRLLPKHIKVIAWMP 711
I +EIPY ++LNRLLP I+++AW P
Sbjct: 268 IADEIPYCRVLNRLLPPDIRIMAWAP 293
>UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5;
Trypanosomatidae|Rep: Pseudouridylate synthase -
Leishmania major
Length = 498
Score = 80.2 bits (189), Expect = 7e-14
Identities = 44/129 (34%), Positives = 74/129 (57%)
Frame = +1
Query: 313 RLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKR 492
+LG ++Q+ +R F+F++ R + LR++Y G + GLA Q+ T TVE + +AL+R
Sbjct: 39 KLGSAKQQRT--ERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRR 96
Query: 493 ACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNR 672
LI N+ RCGRTDKGVS+ G S+ R+ + + + + + Y +LN
Sbjct: 97 LRLIPEDGPHNFGRCGRTDKGVSALGNAFSLTARASCTGDAEPQ----LPPLDYCSMLNN 152
Query: 673 LLPKHIKVI 699
+LP I+++
Sbjct: 153 VLPSTIRIV 161
>UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 414
Score = 78.6 bits (185), Expect = 2e-13
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Frame = +1
Query: 310 QRLGDGQKQKKVDQREFMFEKCH-----YRHVLLRVSYLGWEYQGLAVQENTTQTVEYHL 474
++L K+K++ +R+ +K + V +++Y+G Y GL Q N T+E HL
Sbjct: 20 EKLEAEYKEKQLSKRKLKDKKIKSLDQKFTRVAFKLAYVGINYHGLEQQINQQNTIENHL 79
Query: 475 FEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPY 654
F+AL+R +I +R+ NY R GRTDKGVS+ G V+++ +R ++ Y
Sbjct: 80 FKALQRVRMIDNRDDCNYTRAGRTDKGVSAIGNVVALNVRKIGKSDKL-----------Y 128
Query: 655 SKLLNRLLPKHIKVI 699
+++LNR+LP+ I+++
Sbjct: 129 AQILNRVLPEDIQIL 143
>UniRef50_Q75M65 Cluster: Pseudouridylate synthase; n=2; Oryza
sativa|Rep: Pseudouridylate synthase - Oryza sativa
subsp. japonica (Rice)
Length = 411
Score = 77.0 bits (181), Expect = 7e-13
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +1
Query: 373 CHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLIQSRETSNYHRCGRTD 549
C R + L++ Y G + G A + +T TVE +F+AL+RA L+ SR+ S Y RCGRTD
Sbjct: 89 CPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTD 148
Query: 550 KGVSSFGQVISICLRS 597
KGVS+ GQVIS+ LRS
Sbjct: 149 KGVSATGQVISLFLRS 164
>UniRef50_Q4P5K5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 913
Score = 70.9 bits (166), Expect = 4e-11
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 41/178 (23%)
Frame = +1
Query: 307 KQRLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ-------TVE 465
+Q+ G+K KK +EF F R + LR SY G Y GLA Q T TVE
Sbjct: 106 RQKQAAGKKVKK--HKEFDFASAPCRKIALRFSYDGAGYSGLAAQNTTVPGSGSSLPTVE 163
Query: 466 YHLFEALKRACLIQ---SRETSNYHRCGRTDKGVSSFGQVISICLRS------------- 597
L++AL A L+ + + + RCGRTD+GVS+ GQV+++ +RS
Sbjct: 164 GVLWDALCTARLVDPALGMDGAGFSRCGRTDRGVSAAGQVVALWVRSKKLNQWPDRLEHQ 223
Query: 598 ------------KHSPEEQNKPSCIRN------EIPYSKLLNRLLPKHIKVIAWMPYR 717
K SP+E + RN E+PY ++LNR+LP I++ AW P R
Sbjct: 224 EQFSPLASSLLSKPSPQEWDDLQEKRNAKLEGTELPYVQILNRILPSSIRIQAWSPVR 281
>UniRef50_Q5KC13 Cluster: Pseudouridylate synthase, putative; n=2;
Filobasidiella neoformans|Rep: Pseudouridylate synthase,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 514
Score = 68.1 bits (159), Expect = 3e-10
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTT------QTVEYHLFEALK 489
++ KK ++ F F RH+ L +SY GW Y GLA+Q T TVE L AL+
Sbjct: 55 RRSKKKAEKPFHFPAHPTRHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALE 114
Query: 490 RACLI---QSRETSNYHRCGRTDKGVSSFGQVISICLRS 597
+ LI + E + RCGRTD+GVS GQV+++ +RS
Sbjct: 115 KTRLIAEGKGWEGCGFGRCGRTDRGVSGEGQVVNLWVRS 153
Score = 35.9 bits (79), Expect = 1.5
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 640 NEIPYSKLLNRLLPKHIKVIAWMP 711
+E PY KLLN +LP I+++AW P
Sbjct: 208 SEFPYPKLLNSVLPPSIRILAWSP 231
>UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tRNA
pseudouridine; n=1; Aspergillus niger|Rep: Catalytic
activity: tRNA uridine <=> tRNA pseudouridine -
Aspergillus niger
Length = 517
Score = 68.1 bits (159), Expect = 3e-10
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Frame = +1
Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLA-VQENTTQ--TVEYHLFEALKRACLIQ---- 507
+RE + + R + L+ +YLG Y GL N T T+E +++AL++ +
Sbjct: 96 RREIDPSRYNTRFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRETKPYYI 155
Query: 508 SRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKH 687
+ + Y + GRTD+GVS+FGQVI I +RNE+PY +LN++LP+
Sbjct: 156 NWDGCEYSKAGRTDRGVSAFGQVIGI---------------RVRNELPYVSMLNKVLPED 200
Query: 688 IKVIAWMP 711
I+V+AW P
Sbjct: 201 IRVLAWCP 208
>UniRef50_Q2GVZ0 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 553
Score = 67.3 bits (157), Expect = 5e-10
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTT-QTVEYHLFEALKRACLIQSRETSN-------YHRC 537
R + L+++YLG Y G Q + TVE L+ AL ++CLI + S Y +C
Sbjct: 108 RLIALKLAYLGKRYGGFEYQAGVSVSTVEEELWRALAKSCLIWPDDPSRVDFAPWEYSKC 167
Query: 538 GRTDKGVSSFGQVISICLRSKHSPEEQNKPSC--IRNEIPYSKLLNRLLPKHIKVIAWMP 711
GRTDKG G + R + EE K + + +EI Y ++LNRLLP I+V+AW P
Sbjct: 168 GRTDKGA---GVEVE---RGRGRGEEDGKRAWDPVADEINYPRILNRLLPPDIRVLAWAP 221
>UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_180_17283_16483 - Giardia lamblia
ATCC 50803
Length = 266
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLI-QSRETSNYH--RCGRTDK 552
RH+ ++V Y G EY GLA Q N T+E L AL+ A LI Q E S+ H R GRTD+
Sbjct: 91 RHIAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQHAEASDVHFERSGRTDR 150
Query: 553 GVSSFGQVISICLRSKH 603
GVS+ GQV S +R+ +
Sbjct: 151 GVSAAGQVFSFYVRTNN 167
>UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultured
archaeon GZfos10C7|Rep: Pseudouridylate synthase -
uncultured archaeon GZfos10C7
Length = 284
Score = 62.9 bits (146), Expect = 1e-08
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 361 MFEKCHYRHVLLRVSYLGWEYQGLAVQENTT-QTVEYHLFEALKRACLIQSRETSNYHRC 537
M E+ + L++ Y+G Y G +Q + T+E LF+ALK+ +I+ R+T+NY
Sbjct: 1 MKEERQKERIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYSAA 60
Query: 538 GRTDKGVSSFGQVISICLRSKHS 606
GRTD GV + QV+S ++++
Sbjct: 61 GRTDTGVHALAQVVSFVTSNQNT 83
>UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG10837.1 - Gibberella zeae PH-1
Length = 538
Score = 62.5 bits (145), Expect = 2e-08
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Frame = +1
Query: 214 ERNF*SWTKMISSRK*YSCKPIIHS*KTS*IKQRLGDGQKQKKVD-QREFMFEKCHYRHV 390
E N+ SWTK +K + + + + + D +K K +R+ K R++
Sbjct: 4 ESNYQSWTKNGLIQKVKELEAELGNRPPQVKDEEVYDPKKSTKPKVKRKMDPNKYTTRYI 63
Query: 391 LLRVSYLGWEYQGLAVQENTTQ-TVEYHLFEALKRACLIQSRETS-------NYHRCGRT 546
L+++YLG Y G Q ++E L+ AL +ACLI + Y +CGRT
Sbjct: 64 ALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDFDCCEYSKCGRT 123
Query: 547 DKGVSSFGQVISICLRS-KHSPEEQNKPS 630
DKGVS+FGQVI + +RS + P+++ + S
Sbjct: 124 DKGVSAFGQVIGLRVRSARPVPKKRRRMS 152
>UniRef50_A6RN06 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 575
Score = 62.1 bits (144), Expect = 2e-08
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Frame = +1
Query: 334 QKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQ 507
QK +R+F K + R + L+++YLG Y G + T T+E L++AL +A LI
Sbjct: 42 QKPRRERDFDPSKYNTRLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIF 101
Query: 508 SR------------ETSNYHRCGRTDKGVSSFGQVISICLRSKHS-PEEQNKPS 630
+ E Y +CGRTDKGVS+FGQVI I +RS P+ + KP+
Sbjct: 102 PQGVNPLAPGEVNWEGCEYSKCGRTDKGVSAFGQVIGIRVRSNRPLPKSKVKPT 155
Score = 39.5 bits (88), Expect = 0.12
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 634 IRNEIPYSKLLNRLLPKHIKVIAWMP 711
I +EIPY ++LNRLLP I+++AW P
Sbjct: 220 ITDEIPYPQVLNRLLPPDIRILAWCP 245
>UniRef50_A4R2D6 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 694
Score = 62.1 bits (144), Expect = 2e-08
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQEN-TTQTVEYHLFEALKRACLI 504
+KQK V + F R++ L+++YLG Y GL Q + +E L++AL + CLI
Sbjct: 151 KKQKGVPRNASEFST---RYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLI 207
Query: 505 ---QSRETS-------NYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIR 639
R+ S +Y +CGRTD+GVS+FGQV+++ ++S + P + K S ++
Sbjct: 208 FPDPERDPSEVDFKVCDYSKCGRTDRGVSAFGQVVALRVKS-NKPLRKKKQSAVQ 261
Score = 36.7 bits (81), Expect = 0.87
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 610 EEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMP 711
EE + P EI Y K+LN +LP I+V+AW P
Sbjct: 301 EEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCP 334
>UniRef50_Q4WYK4 Cluster: Pseudouridylate synthase 3; n=6;
Eurotiomycetidae|Rep: Pseudouridylate synthase 3 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 610
Score = 60.9 bits (141), Expect = 5e-08
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 40/160 (25%)
Frame = +1
Query: 352 REFMFEKCHYRHVLLRVSYLGWEYQGLA-VQENTTQ--TVEYHLFEALKRACLI------ 504
RE K + R + L+ +YLG Y GL N T T+E L++A++R LI
Sbjct: 104 REIDPSKYNTRFIALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAE 163
Query: 505 ---QSR------------ETSNYHRCGRTDKGVSSFGQVISICLRSKH--SPEEQNKPSC 633
SR E +Y + GRTD+GVS+FGQVI I +RS P+ +
Sbjct: 164 AFDDSRGPRELKPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDV 223
Query: 634 --------------IRNEIPYSKLLNRLLPKHIKVIAWMP 711
I +EIPY +LNR+LP I+++AW P
Sbjct: 224 EMTSGGHADDTWDDIADEIPYISILNRVLPDDIRILAWCP 263
>UniRef50_A7ANH8 Cluster: tRNA pseudouridine synthase A family
protein; n=1; Babesia bovis|Rep: tRNA pseudouridine
synthase A family protein - Babesia bovis
Length = 248
Score = 60.5 bits (140), Expect = 6e-08
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
+L+ SY+G Y GLA Q + TVE HLF AL A + + Y RCGRTD+ V +
Sbjct: 13 LLMDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANVASDVLNNGYERCGRTDRDVHAL 72
Query: 568 GQVISI----CLR----SKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKV 696
S C S SP+E+ C R ++K +N+ LP+ I+V
Sbjct: 73 HNYASFFPDPCPPNSPCSTVSPDERGVGPCYRIN-TFTKAINKHLPRGIRV 122
>UniRef50_A7F2S8 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 592
Score = 60.5 bits (140), Expect = 6e-08
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Frame = +1
Query: 334 QKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQ 507
QK +REF K + R + L+++YLG Y G + T T+E L++AL +A LI
Sbjct: 42 QKPRREREFDPSKYNTRLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIF 101
Query: 508 SR------------ETSNYHRCGRTDKGVSSFGQVISICLRS 597
+ E Y +CGRTDKGVS+FGQVI I +RS
Sbjct: 102 PQGVNPMAPGEVNWEGCEYSKCGRTDKGVSAFGQVIGIRVRS 143
Score = 39.5 bits (88), Expect = 0.12
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 634 IRNEIPYSKLLNRLLPKHIKVIAWMP 711
I +EIPY ++LNRLLP I+++AW P
Sbjct: 220 ITDEIPYPQVLNRLLPPDIRILAWCP 245
>UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5;
Archaea|Rep: tRNA pseudouridine synthase A -
Methanosarcina acetivorans
Length = 269
Score = 58.8 bits (136), Expect = 2e-07
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
V L+++Y+G E+ G +Q N +TVE LF+AL+ +I+S ++++Y GRTD GV +
Sbjct: 3 VALKLAYIGTEFHGSQIQPNV-ETVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHAL 61
Query: 568 GQVIS 582
GQV++
Sbjct: 62 GQVVA 66
>UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr6 scaffold_3, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 504
Score = 55.2 bits (127), Expect = 2e-06
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Frame = +1
Query: 346 DQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQ--ENTTQTVEYHLFEALKRACLIQSRET 519
DQ +E + V++RV Y+G Y+GL +Q E++ T+E L A+ +A I+
Sbjct: 51 DQSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNY 110
Query: 520 SNYHRCG-----RTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPK 684
N H+ G RTDKGV S +IS+ + + +++ N I + +N LP
Sbjct: 111 GNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDP-----NGIALANYVNFHLPN 165
Query: 685 HIKVIAWMPYRR 720
+IKV + +P +R
Sbjct: 166 NIKVFSILPSQR 177
>UniRef50_A6R922 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 555
Score = 53.6 bits (123), Expect = 7e-06
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Frame = +1
Query: 370 KCHYRHVLLRVSYLGWEYQGLA-VQENTTQ--TVEYHLFEALKRACLI----------QS 510
K + R + L+ +YLG Y G NTT T+E L++AL++A LI S
Sbjct: 86 KYNTRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGVSS 145
Query: 511 RETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHI 690
E S + GV + + + L + E ++ I +E+PY +LNR+LP+ I
Sbjct: 146 TEPSTATSTDAYNSGVENL--LGGLSLSGSENSETEDSWDDIADELPYITILNRVLPEDI 203
Query: 691 KVIAWMP 711
+V+AW P
Sbjct: 204 RVLAWCP 210
>UniRef50_Q5CV63 Cluster: Pseudouridylate synthase; n=2;
Cryptosporidium|Rep: Pseudouridylate synthase -
Cryptosporidium parvum Iowa II
Length = 283
Score = 53.2 bits (122), Expect = 9e-06
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +1
Query: 421 YQGLAVQ-ENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRS 597
+QG+A Q ++ T+E +++AL + LI+ ++ + RCGRTD+GV S G IS+ LR+
Sbjct: 4 FQGIAFQKDDKIPTIEGEIYKALLQLRLIKDIDSCDLVRCGRTDRGVHSAGNYISVNLRT 63
Query: 598 KHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWMPYR 717
+ E Y ++LN +LP I+VI + R
Sbjct: 64 RAKNLEPYN---------YMEMLNGVLPWDIRVIGYCEVR 94
>UniRef50_Q0URV4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 565
Score = 52.4 bits (120), Expect = 2e-05
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 61/189 (32%)
Frame = +1
Query: 328 QKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTT---QTVEYHLFEALKRAC 498
+K K + F K R + L+ +YLG +Y G +N + T+E L++AL +
Sbjct: 54 RKPPKAPPKAFDASKYSSRLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTR 113
Query: 499 LIQ----SRETSNYH-------------------------RCGRTDKGVSSFGQVISICL 591
LI + +T++Y+ +CGRTD+GVS+FGQVI + +
Sbjct: 114 LINPIPTTGDTADYNKADRKTFATWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRV 173
Query: 592 RSKH--------SPEEQNKPSC---------------------IRNEIPYSKLLNRLLPK 684
RS PE Q P + +E+PY +LLNR+LP
Sbjct: 174 RSNRPLPKQPAKEPESQENPPAAEDELDILDSEPDAATKHFNEVTDELPYIQLLNRVLPP 233
Query: 685 HIKVIAWMP 711
I+V AW P
Sbjct: 234 DIRVYAWCP 242
>UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Pseudouridylate
synthase - Methanosphaera stadtmanae (strain DSM 3091)
Length = 274
Score = 52.0 bits (119), Expect = 2e-05
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R V L+++Y+G + G Q N +TVE L K +I+ T++Y GRTDKGV
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNY-RTVEGELLRVFKETNIIEDTWTAHYSVAGRTDKGVH 60
Query: 562 SFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVI--AWMPY 714
S G VIS I +E + LN LLP IK+I A +PY
Sbjct: 61 STGNVISF----------------ITDEDIHINQLNGLLPDDIKIIGEARVPY 97
>UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1;
Candidatus Methanoregula boonei 6A8|Rep: tRNA
pseudouridine synthase A - Methanoregula boonei (strain
6A8)
Length = 276
Score = 51.6 bits (118), Expect = 3e-05
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQV 576
RVSYLG + G + Q+ +++TVE EA +R L T+ + GRTD+GV + GQV
Sbjct: 20 RVSYLGTRFYG-SQQQESSRTVEGEFIEACRRLALFSDWRTAGFASAGRTDRGVHACGQV 78
Query: 577 IS 582
I+
Sbjct: 79 IA 80
>UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 351
Score = 51.2 bits (117), Expect = 4e-05
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTT-QTVEYHLFEALKRACLIQSRET-----SNYHRCGRTD 549
VLL Y G Y GL +Q+ +TVE LF+ALK + LI + S + R RTD
Sbjct: 10 VLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGARTD 69
Query: 550 KGVSSFGQVISI--CLRSKHSPEE--QNKPSCI-----RNEIPYSKLLNRL---LPKHIK 693
KGV + I++ C+ + +E QN+ + + ++ YSK+LN + LP IK
Sbjct: 70 KGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPNDIK 129
Query: 694 V 696
V
Sbjct: 130 V 130
>UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
tRNA pseudouridine synthase A - Methanobacterium
thermoautotrophicum
Length = 275
Score = 50.8 bits (116), Expect = 5e-05
Identities = 34/108 (31%), Positives = 53/108 (49%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R + L+V+Y+G Y G Q + TVE L EAL+ A +I+ + + + GRTD+GV
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDVP-TVEGKLLEALEGAGIIEDPKRARFQIAGRTDRGVH 60
Query: 562 SFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 705
+ G +S E + +N LLP+ I+V+AW
Sbjct: 61 ALGNFVSF----------------FTEEDIHVNQINDLLPRDIRVLAW 92
>UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family
protein, expressed; n=7; Oryza sativa|Rep: TRNA
pseudouridine synthase family protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 516
Score = 49.6 bits (113), Expect = 1e-04
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Frame = +1
Query: 364 FEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQTVEYHLFEAL-KRACLIQSR----ETS 522
+E + V+LRV Y+G EY+GL Q + T+E L A+ K +++S +
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 523 NYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 702
+ R RTDKGV S +IS+ + E N P + I S +N LP +++V +
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWE-NDP----DGIALSNFINSNLPDNVRVFS 180
Query: 703 WMPYRR 720
+P +R
Sbjct: 181 VLPAQR 186
>UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 264
Score = 49.6 bits (113), Expect = 1e-04
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Frame = +1
Query: 364 FEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQTVEYHLFEAL-KRACLIQSR----ETS 522
+E + V+LRV Y+G EY+GL Q + T+E L A+ K +++S +
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 523 NYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 702
+ R RTDKGV S +IS+ + E N P + I S +N LP +++V +
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWE-NDP----DGIALSNFINSNLPDNVRVFS 180
Query: 703 WMPYRR 720
+P +R
Sbjct: 181 VLPAQR 186
>UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n=1;
Arabidopsis thaliana|Rep: Putative tRNA pseudouridine
synthase - Arabidopsis thaliana (Mouse-ear cress)
Length = 510
Score = 49.2 bits (112), Expect = 2e-04
Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Frame = +1
Query: 364 FEKCHYRHVLLRVSYLGWEYQGLAVQEN--TTQTVEYHLFEALKRACLIQSRETSNYHRC 537
+E + V++R+ Y+G +Y+GL +Q + + +T+E L A+ +A I+ + H+
Sbjct: 57 WESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKI 116
Query: 538 G-----RTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 702
G RTDKGV S IS+ + + + + + +K +++ LP++I+V +
Sbjct: 117 GWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTV-----LAKCISKHLPENIRVFS 171
Query: 703 WMPYRR 720
+P R
Sbjct: 172 VLPSNR 177
>UniRef50_Q8SQS9 Cluster: TRNA PSEUDOURIDINE SYNTHASE A; n=1;
Encephalitozoon cuniculi|Rep: TRNA PSEUDOURIDINE
SYNTHASE A - Encephalitozoon cuniculi
Length = 339
Score = 48.0 bits (109), Expect = 4e-04
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R + L++SY G Y G++ Q +T+ +L ALK L E Y GRTD GVS
Sbjct: 59 RTIALKISYDGRRYSGVSPQSGR-ETIGGYLEYALKSTRL---GEKLVY--AGRTDAGVS 112
Query: 562 SFGQVISICLRSKHSPEEQNKPSCIRN----EIPYSKLLNRLLPKHIKVIAWMP 711
+ G + S L S+ E N+ + E Y +LN LP I+V+ W P
Sbjct: 113 AIGMIASGVLTSRI--EMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVVGWAP 164
>UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2;
Filobasidiella neoformans|Rep: Pseudouridylate synthase,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 560
Score = 47.2 bits (107), Expect = 6e-04
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYH-----RCGRT 546
R + + Y G YQG+ +Q++T +T+E +F AL +A + + + R RT
Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAART 182
Query: 547 DKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAWM 708
D GV + G VISI + + E P ++ Y +N LP I++ W+
Sbjct: 183 DAGVHAAGNVISIKMIT-----EPPLPEGFKDVAEY---VNTFLPDQIRMWGWV 228
>UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29;
Euteleostomi|Rep: tRNA pseudouridine synthase A - Homo
sapiens (Human)
Length = 427
Score = 46.4 bits (105), Expect = 0.001
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 525
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 526 YHRCGRTDKGVSSFGQVISI 585
+ RC RTDKGVS+ GQV+S+
Sbjct: 139 FQRCARTDKGVSAAGQVVSL 158
>UniRef50_UPI00015B411C Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 437
Score = 45.6 bits (103), Expect = 0.002
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTT-QTVEYHLFEALKRACLIQ 507
K++K++ + F+ + ++ + + Y G Y G+ Q N T+E L +A+ +A LI
Sbjct: 57 KKQKIEPQPFI--RIKRKNYAMMLGYCGKNYYGM--QRNPGFNTIEEELIKAMLKADLIT 112
Query: 508 SR-----ETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNK 624
S + N+ R RTDKGVS+ QV+S+ L S + N+
Sbjct: 113 SEAFETIQNINFQRAARTDKGVSAVRQVVSLKLPEDPSKDSINE 156
>UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4159-PA - Tribolium castaneum
Length = 588
Score = 45.6 bits (103), Expect = 0.002
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 334 QKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSR 513
+K+ + + EK R + + Y G Y G+ NT T+E F+AL + I
Sbjct: 239 KKETEVTGELIEKIKRRKFAVLLGYSGTNYYGMQRNPNTP-TIEEEFFKALYKNNYISEE 297
Query: 514 -----ETSNYHRCGRTDKGVSSFGQVISICLR 594
+T + R RTDKGVS+ QV+S+ LR
Sbjct: 298 NFTQVQTMQFQRAARTDKGVSAARQVVSLKLR 329
>UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2;
unclassified Epsilonproteobacteria|Rep: Pseudouridylate
synthase - Nitratiruptor sp. (strain SB155-2)
Length = 241
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +1
Query: 400 VSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVI 579
+SY G + G +Q++T TV +HL+ AL+R I+S+ + GRTDKGV + QVI
Sbjct: 7 ISYDGSRFDGFQIQKHTANTVMHHLYNALQRVG-IESKIVGS----GRTDKGVHATAQVI 61
>UniRef50_Q5BT54 Cluster: SJCHGC02715 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02715 protein - Schistosoma
japonicum (Blood fluke)
Length = 83
Score = 44.8 bits (101), Expect = 0.003
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +1
Query: 472 LFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRS 597
L +AL++A LI++R ++ CGRTDKGVS QV+S RS
Sbjct: 4 LLDALEKAKLIENRNECSFSVCGRTDKGVSGICQVVSFVSRS 45
>UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG4159-PA
- Apis mellifera
Length = 366
Score = 44.4 bits (100), Expect = 0.004
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 400 VSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YHRCGRTDKGVSS 564
+ YLG Y G+ + +T+E L AL +A I E + + R RTDKGVS+
Sbjct: 53 LGYLGKNYSGMQINRGI-KTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKGVSA 111
Query: 565 FGQVISICLRSKHSPEEQNK 624
Q++S+ L + + E+ NK
Sbjct: 112 VRQIVSLQLPNHVNKEDINK 131
>UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8839,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 375
Score = 44.4 bits (100), Expect = 0.004
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Frame = +1
Query: 331 KQKKVDQREFMFEKCH-YRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEAL-KRAC 498
K++K D + ++ + + V L ++Y G Y G+ +++ T+E L AL K C
Sbjct: 57 KRRKTDVEQSQEDRRYPKKKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGC 116
Query: 499 LIQSR----ETSNYHRCGRTDKGVSSFGQVISICL 591
+ ++ + ++ RC RTDKGVS+ GQV+S+ L
Sbjct: 117 IPENHAEDMKKMSFQRCARTDKGVSAAGQVVSLKL 151
>UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4;
Clostridia|Rep: Pseudouridylate synthase - Alkaliphilus
metalliredigens QYMF
Length = 255
Score = 44.4 bits (100), Expect = 0.004
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R++++ + Y G Y G +Q+N +++ + +ALK+ + E H GRTD GV
Sbjct: 2 RNIMIEIEYDGTNYSGWQIQQNAP-SIQEEIAKALKKV----TGEEITTHGSGRTDAGVH 56
Query: 562 SFGQVISICLRSK 600
+ GQV S L SK
Sbjct: 57 AQGQVASFQLHSK 69
>UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 621
Score = 44.0 bits (99), Expect = 0.006
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET-----SNYHRCGRT 546
R V + + Y G Y+G+ + +N +T+E LF A A I S+ RC RT
Sbjct: 105 RKVAVMIGYSGTGYKGMQI-DNKQKTIEGDLFTAFVAAGAISKANADDPKKSSLVRCART 163
Query: 547 DKGVSSFGQVISICL 591
DKGV + G VIS+ L
Sbjct: 164 DKGVHAAGNVISLKL 178
>UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1;
Gloeobacter violaceus|Rep: tRNA pseudouridine synthase A
- Gloeobacter violaceus
Length = 304
Score = 44.0 bits (99), Expect = 0.006
Identities = 29/73 (39%), Positives = 37/73 (50%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
LRV YLG + G Q +TV+ L EA +R +R YH GRTD GV + GQ
Sbjct: 19 LRVQYLGGHFFGWQWQPGQ-RTVQQCLEEATERI----ARHPVRYHAAGRTDTGVHASGQ 73
Query: 574 VISICLRSKHSPE 612
V+ K +PE
Sbjct: 74 VVHFDTHKKLAPE 86
>UniRef50_Q7NAQ9 Cluster: tRNA pseudouridine synthase A; n=1;
Mycoplasma gallisepticum|Rep: tRNA pseudouridine
synthase A - Mycoplasma gallisepticum
Length = 262
Score = 43.6 bits (98), Expect = 0.008
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
++VL+ +SY G ++ G AVQ N +TV+ L +AL A + +S+ N GRTDKGV
Sbjct: 22 KNVLINISYHGTKFHGYAVQ-NDYETVQSKLQDAL--AWIYESKIYVN--ASGRTDKGVH 76
Query: 562 SFGQVISICLRSKHSPEE 615
+ Q IS + + S E+
Sbjct: 77 AINQYISFYIDDRISLEK 94
>UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: tRNA pseudouridine
synthase - Entamoeba histolytica HM-1:IMSS
Length = 401
Score = 42.7 bits (96), Expect = 0.013
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Frame = +1
Query: 283 HS*KTS*IKQRLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTV 462
H +T K+ +G K+++ +R F+ V + SY+G Y GL N +T+
Sbjct: 14 HLPETQPKKENTSEGPKEEEKKERIKKFK------VAVIFSYVGRGYFGLMYLNNNPKTI 67
Query: 463 EYHLFEALKRA-CLIQSRETS----NYHRCGRTDKGVSSFGQVISI 585
E + A+ +A C+ + + + RC RTDKGVS+ +IS+
Sbjct: 68 EGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDKGVSAANNLISL 113
>UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2;
Bacteria|Rep: Pseudouridylate synthase - Blastopirellula
marina DSM 3645
Length = 260
Score = 42.7 bits (96), Expect = 0.013
Identities = 31/90 (34%), Positives = 47/90 (52%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R + L VSY G Y G +Q N +T++ AL+R L + E GRTD GV
Sbjct: 7 RALQLIVSYDGTNYAGWQIQ-NDQRTIQ----GALERTLLKITGEKIRVTGSGRTDSGVH 61
Query: 562 SFGQVISICLRSKHSPEEQNKPSCIRNEIP 651
+ GQV+S ++S+ SP+ + + E+P
Sbjct: 62 AIGQVVSFRMQSQLSPDVMRR--ALNAELP 89
>UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 300
Score = 42.3 bits (95), Expect = 0.017
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLI--QSRET---SNYHRCGRTDKGV 558
L +SY G Y G+ + +T+E L AL +A +I ++E ++ RC RTDKGV
Sbjct: 6 LLISYCGVGYAGMQINPGV-RTIEEQLINALHQAEVITDDAKECLGKMSFQRCARTDKGV 64
Query: 559 SSFGQVISI 585
S+ QV+S+
Sbjct: 65 SAARQVVSL 73
>UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 345
Score = 42.3 bits (95), Expect = 0.017
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Frame = +1
Query: 331 KQKKVD--QREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLI 504
K KK+D + +++F+ ++L Y+G +Y GL Q T TVE LF+AL A +
Sbjct: 9 KYKKLDVPRSKYVFD-LDEEIIILLYRYIGTQYHGLQ-QNIDTHTVEKELFQALISAGFL 66
Query: 505 QSRETSNYHR-----CGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLN 669
+ N +R RTD GV + QV+S K CI +IP L+N
Sbjct: 67 SDQANCNLNRIKWSEASRTDAGVHACAQVLSF-------KASGLKGICIA-DIP--DLIN 116
Query: 670 RLLPK--HIKVIAWMPYRR 720
+ LP+ I++I + RR
Sbjct: 117 KQLPRTSDIEIITCITLRR 135
>UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1;
Methanobrevibacter smithii ATCC 35061|Rep:
Pseudouridylate synthase - Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861)
Length = 290
Score = 42.3 bits (95), Expect = 0.017
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
+ L++ Y+G + G Q + +TVE L L++ I + S + GRTD GV
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPDL-RTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60
Query: 562 SFGQVIS 582
S G VIS
Sbjct: 61 SLGNVIS 67
>UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 276
Score = 41.9 bits (94), Expect = 0.023
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQV 576
R+ Y+G + G Q + +TVE + A RA +I SR+ S GRTD+GV + Q+
Sbjct: 16 RIGYIGTSFFGSQYQPDQ-RTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHAKCQI 74
Query: 577 ISICLRSKHSPE 612
+++ S H+P+
Sbjct: 75 LAL---STHNPD 83
>UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 634
Score = 41.5 bits (93), Expect = 0.030
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET-----SNYHRCGRT 546
+ V + + Y G Y+G+ + E T +T+E LF A A I S+ RC RT
Sbjct: 121 KKVAVMLGYSGSGYKGMQLSE-TEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 179
Query: 547 DKGVSSFGQVISICL 591
DKGV + G V+S+ L
Sbjct: 180 DKGVHAAGNVVSLKL 194
>UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus
niger|Rep: Putative frameshift - Aspergillus niger
Length = 567
Score = 41.5 bits (93), Expect = 0.030
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET-----SNYHRCGRT 546
+ V + + Y G Y+G+ + E T +T+E LF A A I S+ RC RT
Sbjct: 119 KKVAVLLGYSGTGYKGMQLSE-TEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCART 177
Query: 547 DKGVSSFGQVISICL 591
DKGV + G ++S+ L
Sbjct: 178 DKGVHAAGNIVSLKL 192
>UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4;
Thermococcaceae|Rep: tRNA pseudouridine synthase A -
Pyrococcus furiosus
Length = 266
Score = 41.1 bits (92), Expect = 0.040
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
V L+++Y G ++ G Q N +T+E + ALK A + E N+ RTD+GVS+
Sbjct: 3 VALKIAYDGTKFHGFQRQPNV-RTIEGEILRALKDAGI----EFENFKSASRTDRGVSAR 57
Query: 568 GQVISI 585
G VI++
Sbjct: 58 GNVIAL 63
>UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 584
Score = 40.3 bits (90), Expect = 0.070
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET-----SNYHRCGRT 546
R V + + Y G Y G+ + +T+E LF A A I S+ RC RT
Sbjct: 108 RKVAVLIGYAGTGYHGIQINHKE-KTIEGDLFSAFVAAGAISKANADDPKKSSLVRCART 166
Query: 547 DKGVSSFGQVISICL 591
DKGV + G V+S+ L
Sbjct: 167 DKGVHAAGNVLSLKL 181
>UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 588
Score = 39.9 bits (89), Expect = 0.093
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETS-----NYHRCGR 543
R V + + Y G YQG+ Q+N +T+E L EAL RA + + + ++ R R
Sbjct: 49 RKVAILLGYCGAGYQGM--QKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAAR 106
Query: 544 TDKGVSSFGQVIS 582
TDKGVS+ QV+S
Sbjct: 107 TDKGVSAAAQVVS 119
>UniRef50_Q6AKP0 Cluster: tRNA pseudouridine synthase A 2; n=2;
Proteobacteria|Rep: tRNA pseudouridine synthase A 2 -
Desulfotalea psychrophila
Length = 261
Score = 39.9 bits (89), Expect = 0.093
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +1
Query: 406 YLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISI 585
Y GW+ Q + TVE + ALK+ Q S RTD GV + GQ+ I
Sbjct: 15 YFGWQAQSIDTLHEEKPTVEGTILNALKKITNYQPCTVSG---ASRTDGGVHARGQIAKI 71
Query: 586 CLRSKHSPE 612
+ K SPE
Sbjct: 72 TISQKISPE 80
>UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis
thaliana|Rep: F14O10.3 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 549
Score = 39.5 bits (88), Expect = 0.12
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +1
Query: 370 KCHYRHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETS---NYH-- 531
K R V + ++ G YQG+ Q+N +T+E L EAL A + + + NY
Sbjct: 54 KYRRRKVAIVFAFCGVGYQGM--QKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWA 111
Query: 532 RCGRTDKGVSSFGQVIS 582
R RTDKGVS+ GQV+S
Sbjct: 112 RSARTDKGVSAVGQVVS 128
>UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
Pseudouridylate synthase - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 246
Score = 39.1 bits (87), Expect = 0.16
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
L ++Y G + G Q+NT QT++ L E L + +E GRTD GV + GQ
Sbjct: 9 LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKIL----KEPVKVIGAGRTDAGVHALGQ 64
Query: 574 VISICLRSKHSPEEQNKPSCIRNEIP 651
V++ K +P ++ P + N +P
Sbjct: 65 VVNFSAPWK-APVDK-IPEILNNTLP 88
>UniRef50_Q7S319 Cluster: Putative uncharacterized protein
NCU07528.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU07528.1 - Neurospora crassa
Length = 625
Score = 38.7 bits (86), Expect = 0.21
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET-----SNYHRCGRT 546
R V + + Y G Y G+ + +T+E LF A +A I S+ RC RT
Sbjct: 121 RKVAVLIGYAGTGYHGIQINHKE-KTIEGDLFAAFVKAGAISKANADDPKKSSLVRCART 179
Query: 547 DKGVSSFGQVISICL 591
DKGV + V+S+ L
Sbjct: 180 DKGVHAAANVLSLKL 194
>UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1;
Yarrowia lipolytica|Rep: tRNA pseudouridine synthase 1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 528
Score = 38.7 bits (86), Expect = 0.21
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Frame = +1
Query: 307 KQRLGDGQKQKKVDQREFMFEKCHY--RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFE 480
+++ G+G+ ++ + ++ R V + Y G Y G+ + +T+E +F+
Sbjct: 58 QEKQGEGRDTRRKTDGPLVADEVRQPKRKVACMIGYCGTGYHGMQLNP-PQKTIEGDIFQ 116
Query: 481 ALKRACLIQSRET-----SNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNE 645
A +A I S + R RTDKGV + G VIS+ K E++N I +
Sbjct: 117 AFVKAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISL----KMIIEDENIVEKINSH 172
Query: 646 IP 651
+P
Sbjct: 173 LP 174
>UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 1 - Schizosaccharomyces pombe (Fission yeast)
Length = 534
Score = 38.7 bits (86), Expect = 0.21
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +1
Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YH 531
EK R V V Y G Y G+ + ++T+E LF+A +A + S +
Sbjct: 39 EKKPKRKVACLVGYCGSGYHGMQLNP-PSKTIEGDLFDAFVKAGAVSSYNADDPKKVALA 97
Query: 532 RCGRTDKGVSSFGQVISICL 591
R RTDKGV + G VIS+ L
Sbjct: 98 RAARTDKGVHAAGNVISLKL 117
>UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2; n=1;
Candida glabrata|Rep: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2 -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 317
Score = 38.3 bits (85), Expect = 0.28
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLIQSRET----SNYHRCGRTDKGV 558
L + YLG YQG+ T++ LF+AL C+ QS S++ R RTDKGV
Sbjct: 3 LVLGYLGTGYQGIQYNP-PAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKGV 61
Query: 559 SSFGQVISICLRSKHSPEE 615
+ ++++ ++ P++
Sbjct: 62 HALTNLVALKMQRYEVPQQ 80
>UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 631
Score = 38.3 bits (85), Expect = 0.28
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYH-----RCGRTDK 552
V + + Y G Y+GL + +T+E +F+A A I ++ RC RTDK
Sbjct: 100 VAVMIGYAGTGYKGLQINTKE-KTIEGDMFKAFVAAGAISKANANDPKKSALIRCARTDK 158
Query: 553 GVSSFGQVISICL 591
GV + G V+S+ L
Sbjct: 159 GVHAAGNVLSLKL 171
>UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1;
Archaeoglobus fulgidus|Rep: tRNA pseudouridine synthase
A - Archaeoglobus fulgidus
Length = 265
Score = 38.3 bits (85), Expect = 0.28
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQV 576
+++Y G + G Q + +TVE + AL+R + E GRTD GV ++GQV
Sbjct: 7 KIAYFGDNFHGSQFQPDQ-RTVEGEVINALRRLGV----ENPRLRSAGRTDAGVHAYGQV 61
Query: 577 ISICLRSKHSPEEQN 621
IS K P N
Sbjct: 62 ISFYSEDKIFPRMLN 76
>UniRef50_Q7QX52 Cluster: Pseudouridylate synthase; n=1; Giardia
lamblia ATCC 50803|Rep: Pseudouridylate synthase -
Giardia lamblia ATCC 50803
Length = 351
Score = 37.9 bits (84), Expect = 0.38
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET---SNYHRCGRTDKGV 558
V L V++ G + G A Q TVE LFE L++ ++ ET R GRTD GV
Sbjct: 3 VALLVAFHGTAFHGNAYQPTGGSTVEGALFEGLQKTGYLKENETIKDIELERTGRTDAGV 62
Query: 559 SS 564
S+
Sbjct: 63 SA 64
>UniRef50_Q8GB97 Cluster: Pseudouridylate synthase; n=2;
Clostridiales|Rep: Pseudouridylate synthase -
Heliobacillus mobilis
Length = 249
Score = 37.5 bits (83), Expect = 0.50
Identities = 31/100 (31%), Positives = 44/100 (44%)
Frame = +1
Query: 400 VSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVI 579
+SY G Y G QE+ T + L RA + + E GRTD GV + GQV+
Sbjct: 1 MSYDGTSYHGFQTQEDPTNLPTIQ--DELMRAIQVLTGEEVKITCAGRTDAGVHARGQVV 58
Query: 580 SICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVI 699
L + P+E+ + +N LLPK I V+
Sbjct: 59 DF-LTTSRIPDEK-----------FPLAMNSLLPKDIAVV 86
>UniRef50_A4WC19 Cluster: Acyltransferase 3; n=1; Enterobacter sp.
638|Rep: Acyltransferase 3 - Enterobacter sp. 638
Length = 358
Score = 37.5 bits (83), Expect = 0.50
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -2
Query: 552 LVCTTTSVIIRGFTALYQTGPFQ-GFKKMIFYCLCCILLYSQTLVFPAKVRYP*EDMTIM 376
L C T V G T LY PF G ++ CC+L YS ++ K+R + + +
Sbjct: 237 LTCIMTYVQFSGLTKLY-LAPFDSGVNMLLMSTSCCMLFYSMSITVNEKLR---KTVCFI 292
Query: 375 AFFKHKFSLVYFFLLLAI 322
A + L++F +L+ I
Sbjct: 293 ASLSYGVYLIHFLILIEI 310
>UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 720
Score = 37.5 bits (83), Expect = 0.50
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YHRCGRT 546
+ V + + Y G Y+G+ + + +T+E LF A A I S+ RC RT
Sbjct: 112 KKVAVLIGYAGTGYKGMQIN-HFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCART 170
Query: 547 DKGVSSFGQVISICL 591
DKGV + VIS+ L
Sbjct: 171 DKGVHAASNVISLKL 185
>UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1;
Methanosaeta thermophila PT|Rep: Pseudouridylate
synthase - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 267
Score = 37.5 bits (83), Expect = 0.50
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
+ L+++YLG Y G Q +TVE + +AL R + ++ GRTD+GVS+
Sbjct: 3 IALKIAYLGDRYYGFQRQPGL-RTVESVMRDALLRIGVANG----DFCYAGRTDRGVSAL 57
Query: 568 GQVI 579
GQVI
Sbjct: 58 GQVI 61
>UniRef50_A7HKV8 Cluster: tRNA pseudouridine synthase A; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: tRNA pseudouridine
synthase A - Fervidobacterium nodosum Rt17-B1
Length = 246
Score = 37.1 bits (82), Expect = 0.66
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R V + SY G ++ G +Q N +TV+ L +AL++ I + + GRTD GV
Sbjct: 2 RRVAIEFSYDGTDFFGYQIQNNV-RTVQGELEKALEKVFKIHI----DTYAAGRTDTGVH 56
Query: 562 SFGQVIS 582
+ GQV+S
Sbjct: 57 ANGQVVS 63
>UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA -
Drosophila melanogaster (Fruit fly)
Length = 410
Score = 37.1 bits (82), Expect = 0.66
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = +1
Query: 400 VSYLGWEYQGLAVQENT-TQTVEYHLFEA-LKRACLIQSR----ETSNYHRCGRTDKGVS 561
+SY G Y G+ Q N QT+E LF+A LK + + + S + R RTDKGVS
Sbjct: 76 LSYCGANYYGM--QRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGVS 133
Query: 562 SFGQVISICL 591
+ QV S+ L
Sbjct: 134 AARQVCSVKL 143
>UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein;
n=3; Leishmania|Rep: Pseudouridylate synthase-like
protein - Leishmania major
Length = 696
Score = 37.1 bits (82), Expect = 0.66
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Frame = +1
Query: 334 QKKVDQREFMFEKCHYR--HVLLRVSYLGWEYQGLAVQEN--TTQTVEYHLFEALKRACL 501
+++ D R M K H+ L V Y G ++GL +Q + T TVE L +ALK A +
Sbjct: 7 RRRPDPRRMMVGKAPKNCVHIGLCVLYSGSGFRGLQIQVHAPTCHTVEGVLIQALKDAGI 66
Query: 502 I----QSRETSNYH---RCGRTDKGVSSFGQVISI 585
I + R +H R RTD+GV + ++S+
Sbjct: 67 IADVVRGRPAGEHHHFARSCRTDRGVHAIRNMVSL 101
>UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 378
Score = 36.7 bits (81), Expect = 0.87
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETSN-----YHRCGR 543
R + + +Y G YQG+ Q+N +T+E L EAL + + ++ + + R R
Sbjct: 39 RKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSAR 96
Query: 544 TDKGVSSFGQVIS 582
TDKGVS+ GQV+S
Sbjct: 97 TDKGVSAVGQVVS 109
>UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7;
Saccharomycetales|Rep: tRNA pseudouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 544
Score = 36.7 bits (81), Expect = 0.87
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN------YHRCGR 543
R V + V Y G Y G+ T+E LF+A A I S++ SN + R R
Sbjct: 75 RKVAVMVGYCGTGYHGMQYNP-PNPTIESALFKAFVEAGAI-SKDNSNDLKKNGFMRAAR 132
Query: 544 TDKGVSSFGQVISI 585
TDKGV + G +IS+
Sbjct: 133 TDKGVHAGGNLISL 146
>UniRef50_Q1Q1P7 Cluster: Pseudouridylate synthase; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Pseudouridylate synthase -
Candidatus Kuenenia stuttgartiensis
Length = 244
Score = 36.3 bits (80), Expect = 1.1
Identities = 24/65 (36%), Positives = 28/65 (43%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R+V L + Y G Y G Q+N E L A RE H GRTD GV
Sbjct: 2 RNVRLTIEYEGTNYAGWQWQKNAISVQE-----TLTHAVRTVIREEVEIHGAGRTDAGVH 56
Query: 562 SFGQV 576
+ GQV
Sbjct: 57 ALGQV 61
>UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3;
Clostridiales|Rep: Pseudouridylate synthase -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 244
Score = 36.3 bits (80), Expect = 1.1
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R++LL + Y G Y G Q N +TV+ + +A+K+ + E N GRTD+GV
Sbjct: 2 RNILLTIEYDGTNYFGWQKQPNK-KTVQGVIEDAIKKI----TGEDVNLVGSGRTDRGVH 56
Query: 562 SFGQVISICLRSKHSPEE 615
+ GQ + SK E+
Sbjct: 57 ALGQKANFKTESKIPTEK 74
>UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 615
Score = 36.3 bits (80), Expect = 1.1
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCG-----RT 546
R V ++ Y G Y GL + +T+E +F+A A + S N ++ G RT
Sbjct: 121 RKVAVKFGYCGIGYSGLQINPGV-KTIEGDIFDAFCTAGAVSSDNAVNPNKVGLQRAART 179
Query: 547 DKGVSSFGQVISICL 591
D+GV + G ++S+ L
Sbjct: 180 DRGVHAAGNLLSLKL 194
>UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 562
Score = 36.3 bits (80), Expect = 1.1
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YHRCGRT 546
R V + V Y G Y G+ T+E LF+A +A I +++ + R RT
Sbjct: 77 RKVAVMVGYCGTGYHGMQYNP-PNPTIEDALFKAFVQAGAISKANSNDLKKNGFMRAART 135
Query: 547 DKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIP 651
DKGV + G +IS+ + + PE + K I E+P
Sbjct: 136 DKGVHAGGNLISLKMIIE-DPEIKQK---INEELP 166
>UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 2 - Schizosaccharomyces pombe (Fission yeast)
Length = 451
Score = 36.3 bits (80), Expect = 1.1
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRC----GRTDKG 555
+++ + Y G+ Y G+ + N +T+E + LK+ +++ H C RTDKG
Sbjct: 41 IIILLGYSGYGYHGIQIN-NPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKG 99
Query: 556 VSSFGQVISICL 591
V + +IS+ L
Sbjct: 100 VHTLRNLISLNL 111
>UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2;
Ostreococcus|Rep: TRNA pseudouridylate synthase -
Ostreococcus tauri
Length = 450
Score = 35.9 bits (79), Expect = 1.5
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETSNYH-----RCGR 543
R L +Y+G Y G+ Q N +T+E L A+ RA I ++ R R
Sbjct: 42 RKCALTFAYVGAGYAGM--QRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 99
Query: 544 TDKGVSSFGQVISI 585
TDKGVS+ GQVI++
Sbjct: 100 TDKGVSAVGQVIAL 113
>UniRef50_Q61UB2 Cluster: Putative uncharacterized protein CBG05398;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG05398 - Caenorhabditis
briggsae
Length = 403
Score = 35.9 bits (79), Expect = 1.5
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 213 REELLKLDKNDLVEKIIQLQAHN-TQLKNIINKTAPW*WPKAEKSRPKRIYV*KM 374
++E+ ++K L EK IQL N ++ + +IN+ + WP+ + R ++I + +M
Sbjct: 178 KQEIANMEKEKLCEKAIQLAQENISEFQLLINRKSDEIWPRLQSERTEKIRIDRM 232
>UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: TRNA pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 596
Score = 35.9 bits (79), Expect = 1.5
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQS-----RETSNYHRCGR 543
+ V + + Y G Y G+ Q+N +TVE L AL R I ++ ++ RC R
Sbjct: 140 KKVAIILGYSGTNYAGM--QKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCAR 197
Query: 544 TDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIP 651
TDKGVS+ V+S+ + P+ + + E+P
Sbjct: 198 TDKGVSAIRNVVSLKM-EMGPPDFEGMKIALNKELP 232
>UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 634
Score = 35.9 bits (79), Expect = 1.5
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Frame = +1
Query: 325 GQKQKKVDQREFMFE---KCHYRHVLLRVSYLGWEYQGLAVQENTTQ-TVEYHLFEALKR 492
G ++++ ++RE + E K R V + Y+G Y GL TVE L AL R
Sbjct: 78 GNRREEEEEREAVDEQARKLPKRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHR 137
Query: 493 ACLIQS--------RETSNYHRCGRTDKGVSSFGQVISI 585
+I ++ N+ R RTDKGV + VIS+
Sbjct: 138 TGMISKENYEQEKVQQKLNWERASRTDKGVHALRNVISL 176
>UniRef50_A2E6F9 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 346
Score = 35.5 bits (78), Expect = 2.0
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLI-----QSRETSNYHRCGRTDK 552
V++ Y+G Y GL E +T++ LFE L+++ ++ + R ++ RTD
Sbjct: 33 VVIYFRYIGTGYHGLQYNEKV-RTIDSDLFEGLEKSGILPEGSYKRRGKIAWNEASRTDA 91
Query: 553 GVSSFGQVISICLRS 597
GV + GQ+ IC +S
Sbjct: 92 GVHACGQL--ICFKS 104
>UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Streptococcus mutans
Length = 249
Score = 35.5 bits (78), Expect = 2.0
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 400 VSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVI 579
+SY G + G Q +TV+ + + L R + S + H GRTD GV ++GQVI
Sbjct: 8 ISYDGTNFSGFQRQPQV-RTVQEEIEKTLLR---LNSGQAVKIHGAGRTDAGVHAYGQVI 63
Query: 580 SICLRSKHSPEE 615
L + E+
Sbjct: 64 HFDLPQQRDLEK 75
>UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 701
Score = 31.9 bits (69), Expect(2) = 2.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 502 IQSRETSNYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNE 645
++ ++ N+ R RTDKGV + V+S+ + + P K + E
Sbjct: 105 VKVQQLLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAVLQE 152
Score = 22.2 bits (45), Expect(2) = 2.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 658 KLLNRLLPKHIKVIAWMPYRR 720
+LLN LP+ I V A +P R
Sbjct: 188 RLLNEALPRDIHVYAVVPVTR 208
>UniRef50_Q1MM77 Cluster: Pseudouridylate synthase; n=13;
Alphaproteobacteria|Rep: Pseudouridylate synthase -
Rhizobium leguminosarum bv. viciae (strain 3841)
Length = 272
Score = 35.1 bits (77), Expect = 2.6
Identities = 26/72 (36%), Positives = 32/72 (44%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
+ V Y G Y G QEN A++ A L + ET + GRTD GV + GQ
Sbjct: 6 MTVEYDGGPYVGWQRQENGPSVQG-----AIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 574 VISICLRSKHSP 609
VI L SP
Sbjct: 61 VIHADLSKDWSP 72
>UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridylate synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 249
Score = 35.1 bits (77), Expect = 2.6
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
+ L + Y G Y G +Q+N TV+ L +A+ R S E + GRTD GV ++
Sbjct: 4 IKLLLEYDGSNYHGFQLQKNAN-TVQAELEKAIYRL----SGERATIVCAGRTDAGVHAW 58
Query: 568 GQVIS 582
GQV++
Sbjct: 59 GQVVA 63
>UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Pseudouridylate synthase
- Uncultured methanogenic archaeon RC-I
Length = 266
Score = 35.1 bits (77), Expect = 2.6
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
L+++Y+G + G Q TVE L +AL+ A I+ + GRTD GV + GQ
Sbjct: 5 LKIAYVGTNFYGSQAQPGLP-TVESELRKALEEAGAIKLG--TKIAMAGRTDAGVHALGQ 61
Query: 574 VISICLRSKHSPEEQNKPSCIRNEIP 651
V++ + + + P I +++P
Sbjct: 62 VVAF----EQADPKLTAPRIINSKLP 83
>UniRef50_A2FDS7 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 365
Score = 34.7 bits (76), Expect = 3.5
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +1
Query: 370 KCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETS---NYHRCG 540
K H ++ L YLG Y G ++ + +TV L EAL +I T +
Sbjct: 34 KPHQTYIALCYGYLGTNYHGSSLHDQ-DKTVTLELQEALVNLGVISPNRTKGALKWSESS 92
Query: 541 RTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEI 648
RTD GV + QV + L + ++ P I+ ++
Sbjct: 93 RTDTGVHAAKQVATFRLVLPEGVKVKDLPRLIQKQL 128
>UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase A - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 246
Score = 34.7 bits (76), Expect = 3.5
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
+ +L ++Y G Y G +Q T TV+ + +AL + +++ H GRTDKGV
Sbjct: 2 KKILAEIAYDGSIYHGFQIQP-TKPTVQGEIEKALMKI----NKKKVKIHSSGRTDKGVH 56
Query: 562 SFGQVISICLR 594
+ Q+I+ ++
Sbjct: 57 AKKQIITFDIK 67
>UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: tRNA
pseudouridine synthase A 1 - Protochlamydia amoebophila
(strain UWE25)
Length = 256
Score = 34.7 bits (76), Expect = 3.5
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
L ++Y G Y G +Q N + +++ + EAL C++ +E GRTD GV + GQ
Sbjct: 6 LTIAYDGTNYSGWQIQPNAS-SIQQKIQEAL---CILLKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 574 V 576
V
Sbjct: 62 V 62
>UniRef50_Q74L59 Cluster: tRNA pseudouridine synthase A; n=18;
Bacilli|Rep: tRNA pseudouridine synthase A -
Lactobacillus johnsonii
Length = 263
Score = 34.3 bits (75), Expect = 4.6
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
L ++Y G + G +Q N +TV+ + EALK+ + + H GRTD GV + GQ
Sbjct: 7 LTMAYDGHLFHGFQIQPNQ-RTVQGVIEEALKK---MTKGKRVVVHGSGRTDAGVHAKGQ 62
Query: 574 VISICLRSKHSP 609
VI K P
Sbjct: 63 VIHFDYPGKEIP 74
>UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep: tRNA
pseudouridine synthase A - Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB8303)
Length = 297
Score = 34.3 bits (75), Expect = 4.6
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 394 LRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQ 573
L ++Y G + G VQE+ T+ + L+ + E H GRTD GV + GQ
Sbjct: 6 LTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGVHADGQ 65
Query: 574 VISI 585
V +
Sbjct: 66 VAHV 69
>UniRef50_Q4Y148 Cluster: Putative uncharacterized protein; n=5;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 2771
Score = 33.9 bits (74), Expect = 6.1
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Frame = +1
Query: 172 KNCHQNRRLTGTQQERNF*SWTKMISSRK*YSCKPIIHS*KTS*-------IKQRLGDGQ 330
KN +NR+ +++NF + I + CK I S S IK
Sbjct: 1294 KNEGKNRKKKKNTKKKNFSHFNHEIIKKIFLKCKSIYSSDTNSSSNGNIFKIKNIKHQNY 1353
Query: 331 KQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ 456
KQ + +++ ++FEK + V L VS GWE V N Q
Sbjct: 1354 KQYEEEKKIYIFEKMKKKQVSLSVSKEGWESHSNLVPSNDVQ 1395
>UniRef50_Q8GPE5 Cluster: Eps4O; n=2; Streptococcus|Rep: Eps4O -
Streptococcus thermophilus
Length = 476
Score = 33.5 bits (73), Expect = 8.1
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = -2
Query: 573 LPK*ANSLVCTTTSVIIRGFTALYQTGPFQGFKKMIFYCLCCILLYSQTLVFP--AKVRY 400
+P+ ANS+ T T +++ ++L QTG F K++ L I T++FP A
Sbjct: 212 IPQLANSIFMTMTKLVLGNLSSLSQTGYFDNSDKVVRILLAFITAIG-TVIFPRIANSFA 270
Query: 399 P*EDMTIMAFFKHKFSLVYFFLLLAITKALFYL*CFSAVYYG 274
+ ++ + F++V + + FS++Y+G
Sbjct: 271 KKDHQSVEKYLILAFNVVNLISFPIVAGVIAISHPFSSIYFG 312
>UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2;
Desulfitobacterium hafniense|Rep: Pseudouridylate
synthase - Desulfitobacterium hafniense (strain Y51)
Length = 271
Score = 33.5 bits (73), Expect = 8.1
Identities = 32/107 (29%), Positives = 50/107 (46%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R++ L+V+Y G Y G Q EA+ A L++ T N GRTD GV
Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVW-AKLVEEEVTLN--TAGRTDTGVH 61
Query: 562 SFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 702
+ GQV++ ++ + +IP K N LLP+ I+++A
Sbjct: 62 AAGQVVNFRTGARIPVD----------KIP--KAFNSLLPRDIRILA 96
>UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2;
Acidobacteria|Rep: Pseudouridylate synthase -
Acidobacteria bacterium (strain Ellin345)
Length = 257
Score = 33.5 bits (73), Expect = 8.1
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVS 561
R+ + ++Y G E+ G +Q T++ L E ++R Q+ + GRTD GV
Sbjct: 3 RNFKITLAYDGHEFHGWQIQPGKP-TIQGTLAETIERITGEQTLPQGS----GRTDAGVH 57
Query: 562 SFGQVISICLRS 597
+ GQV S+ L++
Sbjct: 58 ALGQVASVALQT 69
>UniRef50_A6FXP9 Cluster: Pseudouridylate synthase; n=1;
Plesiocystis pacifica SIR-1|Rep: Pseudouridylate
synthase - Plesiocystis pacifica SIR-1
Length = 285
Score = 33.5 bits (73), Expect = 8.1
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSF 567
+LLRV+Y G ++ G A Q+N Q + + L++A ++ RTD GV +
Sbjct: 3 MLLRVAYDGTDFHGFARQDNGGQPLR-TIQGCLEQALSTLYKQPIRTRGASRTDAGVHAR 61
Query: 568 GQVIS 582
GQ+++
Sbjct: 62 GQLVA 66
>UniRef50_Q8I0W4 Cluster: TRNA pseudouridine synthase, putative;
n=6; Plasmodium|Rep: TRNA pseudouridine synthase,
putative - Plasmodium falciparum (isolate 3D7)
Length = 304
Score = 33.5 bits (73), Expect = 8.1
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +1
Query: 427 GLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGVSSFGQVISICLRSKH 603
G A Q++ TVE L E L + LI + +T R RTDKGVS+ I++ L K+
Sbjct: 12 GSAYQKDNDNTVENKLLENLYKLELIDNYDTP-LSRVSRTDKGVSARINGINLRLNIKY 69
>UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: Pseudouridylate
synthase - Haloquadratum walsbyi (strain DSM 16790)
Length = 276
Score = 33.5 bits (73), Expect = 8.1
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRET----SNYHRCGRTDKGVSS 564
R++Y G + G Q + TVE LF+AL + +R+T S Y GRTD GVS+
Sbjct: 9 RLAYDGRPFSGFQRQPSVP-TVEDALFDALDSLDVF-NRDTDSKPSGYAAAGRTDAGVSA 66
Query: 565 FGQVISICLRSKHSPEEQNK--PSCIR 639
Q + S +P N P+ +R
Sbjct: 67 LRQTVGFECPSWCTPRALNSELPTSVR 93
>UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: tRNA
pseudouridine synthase - Halorubrum lacusprofundi ATCC
49239
Length = 293
Score = 33.5 bits (73), Expect = 8.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRE------TSNYHRCGRTDKGV 558
RV+Y G EY G Q + T TVE L AL + ++ + Y GRTD GV
Sbjct: 12 RVAYDGREYAGFQRQPHAT-TVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAGV 70
Query: 559 SSFGQVIS 582
S+ Q ++
Sbjct: 71 SAVAQTVA 78
>UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3;
Halobacteriaceae|Rep: tRNA pseudouridine synthase A -
Haloarcula marismortui (Halobacterium marismortui)
Length = 275
Score = 33.5 bits (73), Expect = 8.1
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 397 RVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRE--TSNYHRCGRTDKGVSSFG 570
RV+Y G Y G Q + TVE L AL R + + E Y GRTD GVS+
Sbjct: 5 RVAYDGQPYHGFQRQPDV-DTVEGRLRSALVRLGVCERGEGLPDRYAAAGRTDAGVSART 63
Query: 571 QVISICLRSKHSPEEQN 621
Q ++ + SP N
Sbjct: 64 QTVAFDAPAWLSPAAFN 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,564,507
Number of Sequences: 1657284
Number of extensions: 15472593
Number of successful extensions: 38817
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 37177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38748
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87774035305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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