Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P03
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    81   2e-16
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    39   0.001
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    36   0.006
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.96 
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    28   1.7  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   2.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.9  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   5.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   9.0  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
 Frame = +1

Query: 352 REFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQSRETSN 525
           R F  EK  +  V  + +Y GW Y GLA Q   T   TVE  +FEAL RA LI    + +
Sbjct: 84  RPFQLEKTVF--VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCS 141

Query: 526 YHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIAW 705
           + RCGRTDKGVS+ GQVIS+ +R  HS          R  I Y  +LNRLLP  I++  +
Sbjct: 142 FSRCGRTDKGVSAMGQVISLNVR--HSE---------RRPIIYCDVLNRLLPADIRITGY 190


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YH 531
           EK   R V   V Y G  Y G+ +    ++T+E  LF+A  +A  + S    +       
Sbjct: 39  EKKPKRKVACLVGYCGSGYHGMQLNP-PSKTIEGDLFDAFVKAGAVSSYNADDPKKVALA 97

Query: 532 RCGRTDKGVSSFGQVISICL 591
           R  RTDKGV + G VIS+ L
Sbjct: 98  RAARTDKGVHAAGNVISLKL 117


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 388 VLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRC----GRTDKG 555
           +++ + Y G+ Y G+ +  N  +T+E  +   LK+   +++      H C     RTDKG
Sbjct: 41  IIILLGYSGYGYHGIQIN-NPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKG 99

Query: 556 VSSFGQVISICL 591
           V +   +IS+ L
Sbjct: 100 VHTLRNLISLNL 111


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 218 LSCCVPVNLLFWWQF-FHILTSLILLFQAHVVYFNTTLYS 102
           L C VPV  L WW F FH L + I+   A+ + F  T Y+
Sbjct: 542 LMCLVPVEPLRWWVFRFHSLNAGIIQ-AAYALCFPNTDYA 580


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 133 MSY-ILIQPYIPGIVNMYTLNSHMYF 59
           +SY ++++PY+PG V M  + ++ YF
Sbjct: 164 LSYDLMLKPYVPGFVGMNNIKNNDYF 189


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 258 IIQLQAHNTQLKNIINKTAPW*WPKAEKSRPKR 356
           ++ +Q    QL NI+ +  P  WP A   RP+R
Sbjct: 226 LLPIQQCEFQLTNILEQLQPDSWPVANDRRPQR 258


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 133 MSYILIQPYIPGIVNMYTLNSHMYFIYE 50
           +S +L  PYI    ++Y  NSH Y ++E
Sbjct: 194 LSTLLRHPYICEARDVYITNSHYYMVFE 221


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 183 PKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKT 311
           P   +  N T+E+LL   +N L+E++ +LQA N +  + +  T
Sbjct: 614 PNCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 465 FYCLCCILLY 436
           FYCLCCIL Y
Sbjct: 486 FYCLCCILEY 495


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 307 LFMMFFSCVLWACN----CIIFSTRSFLSNFKSSSLVAFRLIFCF 185
           +   FF C  ++ N    C++FS ++  S  K    +  +L++CF
Sbjct: 38  ILSFFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,075
Number of Sequences: 5004
Number of extensions: 70247
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)