Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_P03
(952 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 77 2e-14
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 50 4e-06
02_05_0250 + 27153048-27154453,27154546-27154885 40 0.003
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 33 0.44
05_02_0124 + 6849034-6851502 30 3.1
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684... 30 3.1
10_01_0026 - 351737-353443 29 4.1
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 5.4
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 29 7.2
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 29 7.2
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 29 7.2
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 9.5
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 77.0 bits (181), Expect = 2e-14
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +1
Query: 373 CHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLIQSRETSNYHRCGRTD 549
C R + L++ Y G + G A + +T TVE +F+AL+RA L+ SR+ S Y RCGRTD
Sbjct: 89 CPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTD 148
Query: 550 KGVSSFGQVISICLRS 597
KGVS+ GQVIS+ LRS
Sbjct: 149 KGVSATGQVISLFLRS 164
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 49.6 bits (113), Expect = 4e-06
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Frame = +1
Query: 364 FEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQTVEYHLFEAL-KRACLIQSR----ETS 522
+E + V+LRV Y+G EY+GL Q + T+E L A+ K +++S +
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 523 NYHRCGRTDKGVSSFGQVISICLRSKHSPEEQNKPSCIRNEIPYSKLLNRLLPKHIKVIA 702
+ R RTDKGV S +IS+ + E N P + I S +N LP +++V +
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWE-NDP----DGIALSNFINSNLPDNVRVFS 180
Query: 703 WMPYRR 720
+P +R
Sbjct: 181 VLPAQR 186
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 382 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETS-----NYHRCGR 543
R V + + Y G YQG+ Q+N +T+E L EAL RA + + + ++ R R
Sbjct: 49 RKVAILLGYCGAGYQGM--QKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAAR 106
Query: 544 TDKGVSSFGQVIS 582
TDKGVS+ QV+S
Sbjct: 107 TDKGVSAAAQVVS 119
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 32.7 bits (71), Expect = 0.44
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 304 IKQ-RLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQE-NTTQTVEYHL 474
+KQ ++G GQ +K+ + H+RH++ V Y E+ L V E + +T+++HL
Sbjct: 195 VKQLKVGSGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVYEFVSNKTLDHHL 253
>05_02_0124 + 6849034-6851502
Length = 822
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 472 LFEALKRACLIQSRETSNYHRCGRTDKGVSS--FGQVIS 582
L+E +C+ + R+ HR GR D G+SS F +IS
Sbjct: 420 LYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLIS 458
>01_06_0718 -
31467530-31467892,31468017-31468178,31468268-31468415,
31468536-31468612,31468693-31468763,31468965-31469051,
31469138-31469602,31470357-31470659,31471151-31471202
Length = 575
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 307 KQRLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENT-TQTVEYHL 474
K R G GQ +++ + + H+++++ V Y + Q L V E +T+E+HL
Sbjct: 216 KLRSGSGQGEREFQAEVEIISRVHHKNLVSLVGYCIYGEQRLLVYEYVPNKTLEFHL 272
>10_01_0026 - 351737-353443
Length = 568
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 304 IKQ-RLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ-TVEYHLF 477
+KQ + G GQ +++ + + H+RH++ V Y Q + V E T+E+HL+
Sbjct: 261 VKQLKSGSGQGEREFQAEVDIISRVHHRHLVSLVGYCIAANQRMLVYEFVPNGTLEHHLY 320
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 304 IKQ-RLGDGQKQKKVDQREFMFEKCHYRHVLLRVSY-LGWEYQGLAVQENT-TQTVEYHL 474
+KQ + G GQ +++ + + H+RH++ V Y + Q L V E T+E+HL
Sbjct: 1401 VKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSSQRLLVYEFVPNDTLEHHL 1460
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 310 QRLGDGQKQKKVDQREFMFEKCHYRHVLLRV 402
QRL Q K QR+ EK H+R VLLR+
Sbjct: 187 QRLQKDQTIDKAAQRQLEKEKDHWRKVLLRI 217
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 262 YSCKPIIHS*KTS*IKQ-RLGDGQKQKKVDQREFMFEKCHYRHVLLRVSY-LGWEYQGLA 435
Y K ++ K +KQ + G GQ +++ + + H+RH++ V Y + + L
Sbjct: 118 YVHKGVLAGGKAVAVKQLKSGSGQGEREFQAEVDIISRVHHRHLVSLVGYCIAGARRVLV 177
Query: 436 VQENTTQTVEYHL 474
+ +T+E+HL
Sbjct: 178 YEFVPNKTLEFHL 190
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 307 KQRLGDGQKQKKVDQREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENT-TQTVEYHL 474
K ++G+GQ +++ + H+RH++ V Y + Q + V + T+ YHL
Sbjct: 393 KLKIGNGQGEREFKAEVDTISRVHHRHLVSLVGYCIADGQRMLVYDFVPNNTLYYHL 449
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 28.3 bits (60), Expect = 9.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 358 ILFGLLFSA--FGHHQGAVLFMMFFSCVLWACNCIIFS--TRSFLSNFKSSSLVAFRLIF 191
+LFG++F F H+ +LF++FF L+ N + F+ +F++ S++ V F IF
Sbjct: 292 VLFGMMFQFDFFLHNNFGILFLLFF---LFQLNMLSFAFMISTFVTKAASATTVGF-AIF 347
Query: 190 CFG 182
G
Sbjct: 348 IIG 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,208,272
Number of Sequences: 37544
Number of extensions: 407796
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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