Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P03
         (952 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens ...   136   1e-31
BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthas...   136   1e-31
BC019320-1|AAH19320.2|  427|Homo sapiens pseudouridylate synthas...    46   2e-04
BC009505-1|AAH09505.2|  427|Homo sapiens pseudouridylate synthas...    46   2e-04
BC002901-1|AAH02901.1|  399|Homo sapiens pseudouridylate synthas...    46   2e-04
AF116238-1|AAD21042.1|  365|Homo sapiens pseudouridine synthase ...    46   2e-04

>AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31140 fis, clone IMR322001218, highly similar to
           Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
          Length = 481

 Score =  136 bits (329), Expect = 1e-31
 Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 7/128 (5%)
 Frame = +1

Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNY 528
           +R F F     RHV LR++Y+GW YQG A QENT  T+E  LFEAL +  L++SR+TSNY
Sbjct: 52  KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNY 111

Query: 529 HRCGRTDKGVSSFGQVISICLRSK----HSPEEQN---KPSCIRNEIPYSKLLNRLLPKH 687
           HRCGRTDKGVS+FGQVIS+ LRS+       E+ N   + +    EI Y+ +LNR+LP  
Sbjct: 112 HRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPD 171

Query: 688 IKVIAWMP 711
           I+++AW P
Sbjct: 172 IRILAWAP 179


>BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthase 3
           protein.
          Length = 481

 Score =  136 bits (328), Expect = 1e-31
 Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 7/128 (5%)
 Frame = +1

Query: 349 QREFMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNY 528
           +R F F     RHV LR++Y+GW YQG A QENT  T+E  LFEAL +  L++SR+TSNY
Sbjct: 52  KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNY 111

Query: 529 HRCGRTDKGVSSFGQVISICLRSK----HSPEEQN---KPSCIRNEIPYSKLLNRLLPKH 687
           HRCGRTDKGVS+FGQVIS+ LRS+       E+ N   + +    EI Y+ +LNR+LP  
Sbjct: 112 HRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPD 171

Query: 688 IKVIAWMP 711
           I+++AW P
Sbjct: 172 IRILAWAP 179


>BC019320-1|AAH19320.2|  427|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 427

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = +1

Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 525
           EK   R ++L ++Y G  Y G+     ++Q  T+E  L  AL R+ C+ ++        +
Sbjct: 79  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138

Query: 526 YHRCGRTDKGVSSFGQVISI 585
           + RC RTDKGVS+ GQV+S+
Sbjct: 139 FQRCARTDKGVSAAGQVVSL 158


>BC009505-1|AAH09505.2|  427|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 427

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = +1

Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 525
           EK   R ++L ++Y G  Y G+     ++Q  T+E  L  AL R+ C+ ++        +
Sbjct: 79  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138

Query: 526 YHRCGRTDKGVSSFGQVISI 585
           + RC RTDKGVS+ GQV+S+
Sbjct: 139 FQRCARTDKGVSAAGQVVSL 158


>BC002901-1|AAH02901.1|  399|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 399

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = +1

Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 525
           EK   R ++L ++Y G  Y G+     ++Q  T+E  L  AL R+ C+ ++        +
Sbjct: 51  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 110

Query: 526 YHRCGRTDKGVSSFGQVISI 585
           + RC RTDKGVS+ GQV+S+
Sbjct: 111 FQRCARTDKGVSAAGQVVSL 130


>AF116238-1|AAD21042.1|  365|Homo sapiens pseudouridine synthase 1
           protein.
          Length = 365

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = +1

Query: 367 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 525
           EK   R ++L ++Y G  Y G+     ++Q  T+E  L  AL R+ C+ ++        +
Sbjct: 17  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 76

Query: 526 YHRCGRTDKGVSSFGQVISI 585
           + RC RTDKGVS+ GQV+S+
Sbjct: 77  FQRCARTDKGVSAAGQVVSL 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,061,092
Number of Sequences: 237096
Number of extensions: 2393151
Number of successful extensions: 9326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9322
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12547615372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)