Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_P02
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    32   0.74 
05_04_0142 - 18372751-18373338                                         29   5.2  
07_01_1201 - 11419851-11419913,11420090-11420311                       29   6.9  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  
03_01_0170 + 1389759-1391159                                           29   6.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.1  
04_04_1330 - 32700333-32700770                                         28   9.1  

>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = +1

Query: 604 YKDTRRFP-PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKL 774
           +++   +P P S+ + +PVPTLP++   + F   G    S H +  R Y        S  
Sbjct: 273 FRERPYYPAPQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNP 332

Query: 775 GCV-HEP--PFSPTAAP-YPVLSS 834
           G V HEP  P  P AAP YP  +S
Sbjct: 333 GAVSHEPAIPSYPPAAPSYPPATS 356


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 714 RHASRREKGGQVSGKRQGRNRRAHEGASRRETP 616
           R     E+GG   G++QGR R+A   A R   P
Sbjct: 59  RRVEEEEQGGGGGGRKQGRRRKAVARAIRERLP 91


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 537 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPSWKLPRALSCSDPAAYRIP 683
           L PP          Q+WR+  PTG   + +FP+  LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>03_01_0170 + 1389759-1391159
          Length = 466

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +1

Query: 610 DTRRFPP----GSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLG 777
           D RRF P     S+ +RSP PTLP     +A  P+   A +    CR    + V R    
Sbjct: 42  DGRRFVPDSGCASTRLRSPAPTLPSAASSAAPQPTPLHAAARVFSCRASYDLAVRRRGYH 101

Query: 778 C--VHEPPFSPTAA 813
              +H  PF P  A
Sbjct: 102 VLRLHFYPFEPALA 115


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>04_04_1330 - 32700333-32700770
          Length = 145

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 720 RKRHASRREKGGQVSGKRQGRNRRAHEGASRRETP 616
           R   A  R +GG   G+  G  R  HEG   R +P
Sbjct: 15  RLARAGSRRRGGGSDGEELGGGRDEHEGERERASP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,211,703
Number of Sequences: 37544
Number of extensions: 540421
Number of successful extensions: 1670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)