Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O23
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.027
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   9.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.027
 Identities = 15/55 (27%), Positives = 18/55 (32%)
 Frame = +1

Query: 523 PXXGPPXPPXXPXNPPPXGRXXXTXXP*QXKPPAGGPXXXPXPRXAPLXXXPPPG 687
           P  G P P   P   P   +      P Q  PP G P   P    + +   P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/52 (26%), Positives = 17/52 (32%)
 Frame = +3

Query: 753 SSXPXXPPXXPQAXLGPXXXPFXPPGXXRGPXPXXXXXPXPNQXPGXXXXQP 908
           S  P   P   Q+   P      PP   +GP P       P+Q P      P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 569 PPXAXXPXPPXXNXXNPXXGAPXXXXAP 652
           PP A  P PP  N  N   G P     P
Sbjct: 410 PPSAGAPMPPIPNMSN-MSGMPPLPNMP 436


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 16/69 (23%), Positives = 20/69 (28%)
 Frame = +2

Query: 413 NXLPXKKXTPPGXPPQXGGXXPXXXGGHWXXPXQPXPXXXGPPPPXXXRXTPPPXAXXPX 592
           N +  ++   P   P   G  P    G W    +  P      PP       PP A    
Sbjct: 115 NIINIEQIPVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLR 174

Query: 593 PPXXNXXNP 619
           PP      P
Sbjct: 175 PPLNPRFGP 183


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 16/69 (23%), Positives = 20/69 (28%)
 Frame = +2

Query: 413 NXLPXKKXTPPGXPPQXGGXXPXXXGGHWXXPXQPXPXXXGPPPPXXXRXTPPPXAXXPX 592
           N +  ++   P   P   G  P    G W    +  P      PP       PP A    
Sbjct: 115 NIINIEQIPVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLR 174

Query: 593 PPXXNXXNP 619
           PP      P
Sbjct: 175 PPLNPRFGP 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,618
Number of Sequences: 438
Number of extensions: 8288
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)