Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_O16
(1100 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 4.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 4.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 4.5
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 7.8
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/104 (25%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Frame = +2
Query: 602 PXPKGXXXGGWGXPXWLTXPPGXXPRXPXXXRXHXXXDSPXAGPG-PAXXXXKXXXXXGX 778
P P G G G P + P P P + GPG P G
Sbjct: 164 PGPPGPD-GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 779 XPXXPXAGPRGX-GXPPXRAXGPLXAXXPPXRLXXEGXHXSPRG 907
AGP G G P GP PP G +P G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/104 (25%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Frame = +2
Query: 602 PXPKGXXXGGWGXPXWLTXPPGXXPRXPXXXRXHXXXDSPXAGPG-PAXXXXKXXXXXGX 778
P P G G G P + P P P + GPG P G
Sbjct: 164 PGPPGPD-GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 779 XPXXPXAGPRGX-GXPPXRAXGPLXAXXPPXRLXXEGXHXSPRG 907
AGP G G P GP PP G +P G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/104 (25%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Frame = +2
Query: 602 PXPKGXXXGGWGXPXWLTXPPGXXPRXPXXXRXHXXXDSPXAGPG-PAXXXXKXXXXXGX 778
P P G G G P + P P P + GPG P G
Sbjct: 164 PGPPGPD-GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 779 XPXXPXAGPRGX-GXPPXRAXGPLXAXXPPXRLXXEGXHXSPRG 907
AGP G G P GP PP G +P G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 4.5
Identities = 27/104 (25%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Frame = +2
Query: 602 PXPKGXXXGGWGXPXWLTXPPGXXPRXPXXXRXHXXXDSPXAGPG-PAXXXXKXXXXXGX 778
P P G G G P + P P P + GPG P G
Sbjct: 164 PGPPGPD-GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 779 XPXXPXAGPRGX-GXPPXRAXGPLXAXXPPXRLXXEGXHXSPRG 907
AGP G G P GP PP G +P G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -1
Query: 932 GGXGEXCXXPGGSXGPPRXEVSXGXXXRTXDRGXXXXGTQXHGGPPXG 789
GG G+ PGG GPP G G G GGPP G
Sbjct: 159 GGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGM--GGPPPG 204
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -1
Query: 932 GGXGEXCXXPGGSXGPPRXEVSXGXXXRTXDRGXXXXGTQXHGGPPXG 789
GG G+ PGG GPP G G G GGPP G
Sbjct: 439 GGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGM--GGPPPG 484
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 7.8
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Frame = +2
Query: 599 APXPKGXXXGGWGXPXWLTXPPGXXPRX----PXXXRXHXXXDSPXAGPGPAXXXXKXXX 766
AP P+G G+G P P G P+ P + H GP P
Sbjct: 320 APPPQGAPQQGFGAPPQ-GPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAP--- 375
Query: 767 XXGXXPXXPXAGPRGXGXPPXRAXG 841
G P +GP G PP A G
Sbjct: 376 --GNFAPPPQSGPPGAFAPPPSAFG 398
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,406
Number of Sequences: 27780
Number of extensions: 192512
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2971275592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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