Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O15
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.3  
01_01_0715 - 5542648-5543219,5543352-5543544                           30   3.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   5.3  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     29   7.0  
01_07_0082 - 40965947-40967023                                         28   9.3  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 23/66 (34%), Positives = 23/66 (34%)
 Frame = +1

Query: 424 PXXGGXXXXFPXXKXPPPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXPXPKGGNLXFP 603
           P   G     P    PPPP   G     P P PP   P P     G   P PKGG    P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKG-----PSPPPP---PPPGGKKGGPPPPPPKGGASRPP 390

Query: 604 KXGGXP 621
              G P
Sbjct: 391 AAPGVP 396


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = +1

Query: 454 PXXKXPPPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXPXPKGGNLXFPKXGG 615
           P  +  PPP   G       P PP   P P         P P GGN   P   G
Sbjct: 155 PTPRPSPPPPAAGTNGTARAPSPPVPAPAPA-GSPPPPPPPPAGGNFTAPSPAG 207


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +1

Query: 469  PPPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXPXPKGG-NLXFPKXG 612
            PPPP   G       P PP     P   G   G P P GG  L  P  G
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 436 GXXXXFPXXKXPPPPXXXGFFFWXPXPXPPXKTPXP 543
           G    FP    PPPP         P P PP   P P
Sbjct: 255 GLPAGFPFLLRPPPPLPVPGVICRPPPSPPYFAPPP 290


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
 Frame = +1

Query: 421 FPXXGGXXXXFPXXKXPPPPXXXGFFFWXPXPXPPXKTPXP---XFWGXGXGXPXPKGGN 591
           +P   G     P    PPP    G+    P P      P P     +G G G P P+ G 
Sbjct: 240 YPAAAGPSTAAPYGTAPPPQYGYGYPAQPPPPQAGYGYPPPPPQAGYGGGYGYP-PQAGY 298

Query: 592 LXFPKXGGXPXKK 630
             + +    P KK
Sbjct: 299 GGYQQQAVKPAKK 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,990
Number of Sequences: 37544
Number of extensions: 171170
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)