Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O15
         (936 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.22 
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +1

Query: 469 PPPPXXXGFFFWXPXPXP-PXKTPXPXFWGXGXGXPXPKGGNLXFPKXGGXP 621
           PPPP   G   W P P P P +TP P   G     P P       P  GG P
Sbjct: 287 PPPPPSSGM--WPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPGMGGMP 334


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +1

Query: 469 PPPPXXXGFFFWXPXPXP-PXKTPXPXFWGXGXGXPXPKGGNLXFPKXGGXP 621
           PPPP   G   W P P P P +TP P   G     P P       P  GG P
Sbjct: 297 PPPPPSSGM--WPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPGMGGMP 344


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = +1

Query: 415 FFFPXXGGXXXXFPXXKXPPPPXXXGFFFWXPXPXPPXKTPX---PXFWGXGXGXPXPKG 585
           F  P  GG          PPPP   G     P   P  + P    P F G G G P P G
Sbjct: 17  FLLPSGGGGGCGCAPPP-PPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAPCG 75

Query: 586 G 588
           G
Sbjct: 76  G 76


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +1

Query: 424 PXXGGXXXXFPXXKXPPPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXPXPKG 585
           P   G     P    PPPP   G +   P   PP   P P   G   G P  +G
Sbjct: 420 PGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNPFARG 473


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 472 PPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXPXPKGGNLXFP 603
           PPP   GF    P P P    P P  +  G   P P  G +  P
Sbjct: 66  PPPVPNGFI--PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 469 PPPPXXXGFFFWXPXPXPPXKTPXPXFWGXGXGXP 573
           PPPP      +  P   PP K P P F G G   P
Sbjct: 550 PPPPPHPEEEYATPYTVPPGKQPFPPF-GEGPATP 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,459,153
Number of Sequences: 27780
Number of extensions: 113566
Number of successful extensions: 299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)