Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_O13
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.27
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.62
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 1.4
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 376 KKGAPXXXXPPPPPPPXXGGXPXGGGXPPXGGXXGXPPP 492
+ AP P PPPP P P G PPP
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 388 PXXXXPPPPPPPXXGGXPXGGGXPPXGGXXGXPPP 492
P P PPPPP P P G PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +1
Query: 325 TPPPXKNXVSXGXXXFFKKGAPXXXXPPPPPPPXXGGXPXGGGXPPXGGXXGXPP 489
T PP S GAP P P P P G PP G PP
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 403 PPPPPPPXXGGXPXGGGXPPXGGXXGXPPP 492
P PPP P GG P P G PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +1
Query: 385 APXXXXPPPPPPPXXGGXPXGGGXPPXGGXXGXPPPXFXXG 507
AP PPPPPPP G G PP PPP G
Sbjct: 755 APIMGGPPPPPPPP--GVAGAGPPPPP-----PPPPAVSAG 788
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = -2
Query: 506 PXKKXGGGXPXXPPXG--GXPPPXGXPPXXGGGGGGGXXXXGAP 381
P GG P PP G G PP PP GG AP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 402 PPPPPPPXXGGXXP 443
PPPPPPP G P
Sbjct: 762 PPPPPPPGVAGAGP 775
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.62
Identities = 23/81 (28%), Positives = 25/81 (30%)
Frame = +1
Query: 331 PPXKNXVSXGXXXFFKKGAPXXXXPPPPPPPXXGGXPXGGGXPPXGGXXGXPPPXFXXGX 510
PP + VS KK P PPPPP G P G PPP
Sbjct: 293 PPPSSRVSAAALAANKKRPP----PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 511 XXXXXXXKKKXGXXXXXPPPP 573
+ G PPPP
Sbjct: 349 GSIPLPPQ---GRSAPPPPPP 366
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect(2) = 1.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 388 PXXXXPPPPPPP 423
P PPPPPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 21.4 bits (43), Expect(2) = 1.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 406 PPPPPPXXGGXPXGGG 453
PPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 33 SLKILNWRLPIGADGCVSNCLYL 101
+L I+ W P+ GC+SN YL
Sbjct: 383 TLMIIFWAFPVAVVGCISNVNYL 405
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 490 GGGPPXXPPXGXXPPXGXXPPXXGG 416
G PP PP G PP PP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 403 PPPPPPPXXGGXPXGGGXPPXGG 471
PPPPPPP P PP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 388 PXXXXPPPPPPPXXGGXPXGGGXPP 462
P PPPPPPP G P PP
Sbjct: 5 PPGNPPPPPPPP--GFEPPSQPPPP 27
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 295 PXFFXPXNXKTPPPXKNXVSXGXXXFFKKGAPXXXXPPPPPPP 423
P P + +PPP S P PPPPPPP
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPA---TSLPSDYNPPPPPPP 195
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 560 PPPPPXXXXXXFSFXXXXPPPPXXXXXKXPP 652
PPPPP + PPPP PP
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPP 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,799
Number of Sequences: 5004
Number of extensions: 41556
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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