Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O12
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    22   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -1

Query: 427 GXXPPPPPPKXPGXXGFFGXGXTGXXPPKXQNPLSPGGG 311
           G  PPPPPP  PG  G       G  PP    P    GG
Sbjct: 759 GGPPPPPPP--PGVAG------AGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 GXLGGGGGGXXPXPKGGX*GF 455
           G  GGG GG  P P GG  GF
Sbjct: 191 GGFGGGSGGPPPGP-GGFGGF 210



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 390 PGXLGGGGGGXXPXPKGGX*GFPXKXGG 473
           PG  GGG GG    P GG  G P   GG
Sbjct: 244 PGGFGGGLGGFGGGP-GGFGGGPGGHGG 270


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 529 GXXPPKKTXPXXXGFFXKXXXPPPPP 606
           G  PP    P   GF      PPPPP
Sbjct: 7   GNPPPPPPPP---GFEPPSQPPPPPP 29



 Score = 21.4 bits (43), Expect(2) = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 592 PPPPPGXXXK 621
           PPPPPG   K
Sbjct: 26  PPPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect(2) = 9.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 418 PPPPPPKXPG 389
           PP PPP  PG
Sbjct: 388 PPAPPPAIPG 397



 Score = 21.0 bits (42), Expect(2) = 9.6
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 433 GXGXXPPPPPPKXP 392
           G    PPPPP   P
Sbjct: 357 GRSAPPPPPPRSAP 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,034
Number of Sequences: 5004
Number of extensions: 25078
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)