Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O10
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    50   6e-07
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         47   3e-06
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   3.7  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   4.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   8.6  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   8.6  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 28/100 (28%), Positives = 54/100 (54%)
 Frame = +3

Query: 111 IFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHL 290
           IF KI++ +IP   + E    +AF D+ P +  H LVIP++   ++    +  ++    +
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKM---HELSDESCADI 60

Query: 291 LIVARKVAAQVGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 410
           L + +KV   +G +   + ++ N+G+   Q V H+H HI+
Sbjct: 61  LPLVKKVTKAIGPE--NYNVLQNNGRIAHQFVDHVHFHII 98


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 138 IPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAA 317
           + +   Y  +   AF ++ P  P HVLVIP++ +P+L    D     L  L    RKV  
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKVQQ 68

Query: 318 QVG--LDKTGFRLVVNDGKNGAQSVYHLHIHIL 410
            +      +   + + DG +  Q+V H+H+HI+
Sbjct: 69  VIEKVFSASASNIGIQDGVDAGQTVPHVHVHII 101


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 701 RRGTLQRKNRIVIFINSEHFHIYLPFKPLDFHK 603
           RR TL RK   +  + + H  I  P+K  + HK
Sbjct: 444 RRETLNRKRITIAKLQNNHSQITFPYKRHNIHK 476


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 141 GFLYVIFSQRLYHRLERQFVRVSPHRPPCL 52
           GFL  + S ++Y R    F+ + P    CL
Sbjct: 169 GFLQCVLSGKVYDRASYDFINLGPESTVCL 198


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 49  YKTWRTVR*NSHKLPLQAVIQSLGKYY--VKKSLQISF 156
           Y+ W ++  N   +  + +I SLG Y   +K+ LQI F
Sbjct: 345 YELWNSILQNHFIISSRNIIDSLGLYVNKIKEKLQICF 382


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 297 VARKVAAQVGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 410
           V  +V  Q  +DK   ++ V+       S YHLH+HIL
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,766
Number of Sequences: 5004
Number of extensions: 57086
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)