Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O10
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...   101   6e-22
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    97   2e-20
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    57   2e-08
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701     32   0.74 
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364...    30   3.0  

>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score =  101 bits (243), Expect = 6e-22
 Identities = 54/109 (49%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
 Frame = +3

Query: 81  AQTAAPGGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSL 254
           A TA  GG TIF KI+ KEIP+N +YEDE+ +AF D+NPQAP HVLVIP  R  +  L  
Sbjct: 36  AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDK 95

Query: 255 ADDTDEQLLGHLLIVARKVAAQVGLDKTGFRLVVNDGKNGAQSVYHLHI 401
           A+    ++LG+LL  A+ VA + G+ + G+R+V+N   NG + +Y LHI
Sbjct: 96  AEPRHVEILGYLLYAAKIVAEKEGIAE-GYRVVIN---NGPKGLYMLHI 140


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 43/94 (45%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = +3

Query: 102 GDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQ 275
           G  +F KI++KEIP+  +++DE+ +AF D+NPQAPTH+++IP  +  +  LS A++   +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251

Query: 276 LLGHLLIVARKVAAQVGLDKTGFRLVVNDGKNGA 377
           +LG+LL VA+ VA Q GL+  G+R+V+NDG +G+
Sbjct: 252 ILGYLLYVAKVVAKQEGLE-DGYRIVINDGPSGS 284


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +3

Query: 99  GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQL-SLADDTDEQ 275
           G   +F +I++   PA  +YED+ C+   D  P +  H L+IP++  P L +        
Sbjct: 70  GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAA 129

Query: 276 LLGHLLIVARKVAAQVGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQ 422
           +   L +++  +      D   F ++VN+GK   Q ++H H+H++  R+
Sbjct: 130 ICCKLPLISSAIVKATQCD--AFNVLVNNGKVAGQVIFHTHVHLIPRRK 176


>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
          Length = 204

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 263 VISQRELWNRLPWYH----QYMSRSLWVHIIERYALFVFVNEICRDFFT*YFPKD 111
           ++  REL+  LP        YM R L +H +  Y L +    IC  FF+ + PK+
Sbjct: 123 ILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177


>04_03_0594 -
           17733827-17735085,17735576-17735642,17736379-17736413,
           17736810-17737665
          Length = 738

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 309 VAAQVGLDKTGFRLVVNDGKNGAQSVYHLHIHILG 413
           +A Q G   TGF+L  ND  NG  ++   ++ +LG
Sbjct: 27  IAGQPGCAMTGFKLSCNDTGNGVPTLLLRNVEVLG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,849
Number of Sequences: 37544
Number of extensions: 366605
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)