Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_O06
(934 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 39 0.007
02_05_0686 - 30900748-30902167,30903442-30904742 38 0.009
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.3
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 2.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 7.0
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 38.7 bits (86), Expect = 0.007
Identities = 22/62 (35%), Positives = 24/62 (38%)
Frame = -2
Query: 903 GGPXXNPPXGXXGXGLXGPLXXIFXGXPPXWGKPXXPLXGXKXXPPPXXXGXGXXGGGXG 724
G P NPP G G L + G +G P G PPP G G GGG G
Sbjct: 355 GAPPPNPPYSGGAPGGQGSLPPSYDGG---YGGRPMPGGGGPGAPPPYHGGGGGGGGGGG 411
Query: 723 XG 718
G
Sbjct: 412 GG 413
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 38.3 bits (85), Expect = 0.009
Identities = 25/72 (34%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Frame = +2
Query: 719 PXPXPPPKX-----PXPXXXGGGXXFXPXRGXXGFPQXGGXPKKIXXXGPXRPNPKXPXG 883
P P PPPK P P P +G P G P GP P P P G
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP-PPPPPG 371
Query: 884 GFXXGPPPXXXK 919
G GPPP K
Sbjct: 372 GKKGGPPPPPPK 383
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/66 (30%), Positives = 21/66 (31%)
Frame = +2
Query: 725 PXPPPKXPXPXXXGGGXXFXPXRGXXGFPQXGGXPKKIXXXGPXRPNPKXPXGGFXXGPP 904
P PPP P P + P G P GP P P P G PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGP--PPPPPPKGPSPPPPP 368
Query: 905 PXXXKK 922
P KK
Sbjct: 369 PPGGKK 374
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = -2
Query: 906 GGGPXXNPPXGXXGXGLXGPLXXIFXGXPPXWGKPXXPLXGXKXXPPPXXXGXGXXGGGX 727
GGG PP G G L P G P G P G G GGG
Sbjct: 153 GGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGG 212
Query: 726 GXG 718
G G
Sbjct: 213 GEG 215
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +2
Query: 725 PXPPPKXPXPXXXGGGXXFXPXRGXXGFPQXGGXPKKIXXXGPXRPNPKXPXGGFXXGPP 904
P PPP P P G G P P + GP P P G GPP
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPP-----PPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPP 385
Query: 905 P 907
P
Sbjct: 386 P 386
Score = 29.1 bits (62), Expect = 5.3
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Frame = +2
Query: 719 PXPXPPPKXPXPXXXGGGXXFXPXRGXXGFPQXGG-------XPKKIXXXGPXRPNPKXP 877
P P PP P G G P P+ G P G P P P
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
Query: 878 XGGFXXGPPPXXXKKXP 928
G GPPP KK P
Sbjct: 391 GGPRARGPPP--FKKSP 405
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GGGPXXNPPXGXXGXGLXGPLXXIFXGXPPXWGKP 802
G GP PP G G G GP G P G P
Sbjct: 365 GPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPP 399
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 719 PXPXPPPKXPXPXXXGGGXXFXPXRGXXGF-PQXGGXPK-KIXXXGPXRPNPKXPXGGFX 892
P P P PK P G P G P+ G PK K GP +P PK P G
Sbjct: 159 PGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGP-KPKPKPPKPGPK 217
Query: 893 XGPPP 907
P P
Sbjct: 218 PKPGP 222
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 719 PXPXPPPKXPXPXXXGGG 772
P P PPP+ P P GGG
Sbjct: 9 PPPPPPPQHPPPPQAGGG 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,220
Number of Sequences: 37544
Number of extensions: 357598
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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