Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O05
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    67   3e-12
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    64   3e-11
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    62   1e-10
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    28   2.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   4.8  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    26   8.5  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   8.5  

>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
 Frame = +2

Query: 410 VLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKIRPGE 589
           V+ GASGDL++KK +P ++ L+ +  LP + + +GYAR+K    +  +R  + +KI   +
Sbjct: 15  VVFGASGDLSKKKTFPALFSLFSEGRLPKDIRIVGYARSKIEHEDFLDRITQNIKIDEED 74

Query: 590 ---EEKLETFWNANNYVSGSYDGRIDYEFLN 673
              +EKLE F    +Y  GSYD   D+E LN
Sbjct: 75  SQAKEKLEEFKKRCSYYRGSYDKPEDFEGLN 105


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
 Frame = +2

Query: 404 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFI-GYARTKQSVSEVRERCQKYMKIR 580
           TF++ GASG+LA KK +P +++L++ NL+  ++ ++ GYAR+K  + E RE  ++ +K  
Sbjct: 3   TFMVFGASGNLANKKTFPALFHLFKRNLVDRSSFYVLGYARSKIPIGEFRESIRESVKPD 62

Query: 581 PGEEEKLETFWNANNYVSGSYDGRIDY-EFLNRIIS 685
              ++  + F +  +Y SG YD    Y EF   + S
Sbjct: 63  TESKQVFQDFIDRVSYFSGQYDQSSSYVEFRKHLES 98


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +2

Query: 404 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKI-- 577
           + ++ GASGDLA K  +P ++ LY   ++P + + IGYAR+K S     +    ++ I  
Sbjct: 3   SIIVFGASGDLATKMTFPALFALYVRKIIPEDFQIIGYARSKLSQEAANKIVTAHIPIDD 62

Query: 578 RPGEEEK-LETFWNANNYVSGSYDGRIDYEFLNRIIS 685
             G  +K L TF     YV G+YD    +E LN II+
Sbjct: 63  TVGASQKALNTFVEHYKYVPGTYDKPESFEMLNSIIA 99


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 269 RILQFTCSCLTVTIKKHQNSSPTTTSRSSCIETNMENKTEFDYPH 403
           RIL  +   +T  +   +++   TTS++   ET+ +   E  +PH
Sbjct: 84  RILYMSAGAVTAAVPNKEHTDNVTTSQTIRYETSSQPSQEVYHPH 128


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 41   FDSVLTTHSTVNWLELVPATFNSVV*WREQFIFCLLN 151
            F ++++   +  W++L P  F+S+  W ++    LLN
Sbjct: 1636 FKTLVSEEGSFQWVKLQPTNFDSLSNWTKEETLKLLN 1672


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 500 TKFIGYARTKQSVSEVRERCQKYMKIRPGEEEKLETFWNANNY 628
           TKF+ Y   K  +    + C +  +I    E+KL T W+A NY
Sbjct: 221 TKFLEYNNMKH-ILRAHQLCSEGYQIL--FEKKLSTVWSAPNY 260


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 408 LYSSVRLGTWLEKKFILLSGIYIVITFCRITPSLLVMRVLSNLF 539
           L    RL  ++     L S +  ++  CR  PSLL +R L+ +F
Sbjct: 135 LMQKCRLSYFIFCNVFLWSAMVCLMAACRNGPSLLGLRFLAGIF 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,956
Number of Sequences: 5004
Number of extensions: 56592
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)