Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_O05
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 67 2e-11
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 66 5e-11
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 62 4e-10
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 54 2e-07
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 44 1e-04
10_06_0012 - 9586478-9588880 30 2.2
09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666 29 5.1
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 66.9 bits (156), Expect = 2e-11
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Frame = +2
Query: 314 KHQNSSPTTTSRSSCIETNMENKTEFDYPHTFVLLGASGDLARKKIYPTIWYLYRDNLLP 493
K +N SP+ + + ++ + D + ++GASGDLA+KKI+P ++ LY ++ LP
Sbjct: 72 KVENGSPSEIILDDFEDLSPLSEND-DSTVSITVVGASGDLAKKKIFPALFALYYEDCLP 130
Query: 494 HNTKFIGYARTKQSVSEVRERCQKYMKIRPGE----EEKLETFWNANNYVSGSYDGRIDY 661
+ GYAR+K + +E+R K + R + EK+E F Y SG YD +
Sbjct: 131 KHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCNEKMEEFLKRCFYHSGQYDSEEHF 190
Query: 662 EFLNRIISNH 691
L++ + H
Sbjct: 191 MDLDKKLKQH 200
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 65.7 bits (153), Expect = 5e-11
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +2
Query: 404 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFI-GYARTKQSVSEVRERCQKYMKIR 580
+ V+LGASGDLA+KK +P +++L++ L I GYAR+ S +RER + Y+K
Sbjct: 36 SIVVLGASGDLAKKKTFPALFHLFQQGFLQSGEVHIFGYARSNISDDGLRERIRGYLK-- 93
Query: 581 PGEEEKLETFWNANNYVSGSYDGRIDYEFLNRIISNH 691
+E + F YVSGSY+ + LN IS +
Sbjct: 94 GASDEHISQFLQLIKYVSGSYNSGEGFASLNNAISEN 130
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +2
Query: 404 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKIRP 583
+ ++GASGDLA+KKI+P ++ LY ++ LP + GYAR+K S E+R + R
Sbjct: 85 SITVVGASGDLAKKKIFPALFALYYEDCLPEHFTVFGYARSKMSDEELRNMISLTLTCRI 144
Query: 584 GEEE----KLETFWNANNYVSGSYDGRIDYEFLNR 676
+ E K+E F Y SG Y+ + L+R
Sbjct: 145 DQRENCSDKMEQFLKRCFYQSGQYNSEEGFSELDR 179
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = +2
Query: 398 PHTFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKI 577
P ++GA+G+LA+ K++P ++ LY LP N GY+R + ++R + +
Sbjct: 155 PLCIAVIGATGELAKNKVFPALFALYYSGFLPQNVGIFGYSRKTLTDEDLRSMIEANLTC 214
Query: 578 RPGE----EEKLETFWNANNYVSGSYDGRIDYEFLNRIIS 685
R +EKL F Y+ YD + LN +S
Sbjct: 215 RVDHHENCDEKLNEFLKRTYYIDAGYDNKDGMVKLNSKMS 254
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +2
Query: 512 GYARTKQSVSEVRERCQKYMKIRPGEEEKLETFWNANNYVSGSYDGRIDYEFLNRIISNH 691
GYAR+ S +RER + Y+K EE L F YVSGSYD +E LN+ IS +
Sbjct: 455 GYARSNLSDDGLRERIRGYLK--GASEEHLSDFLQHIKYVSGSYDSGEGFEKLNKEISEY 512
>10_06_0012 - 9586478-9588880
Length = 800
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 428 GDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEV---RERCQKYMKIRPGEEEK 598
G KK + +Y ++ +LPHN + A +K SEV C Y + G
Sbjct: 341 GSTMNKKGFTDKFYCVQNIILPHNAMSVQTAGSKDQCSEVCLSNCSCTAYSYGKGGCSVW 400
Query: 599 LETFWNANNYVSGSYDGRIDYEFLNRIISN 688
+ +N GS DG + ++ R+ +N
Sbjct: 401 HDALYNVRQQSDGSADGNGETLYI-RVAAN 429
>09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666
Length = 567
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 532 ICFRSKRKVSKVHENTPRRRRKIRDILEC 618
+CFR+KR +K+HE+ + R + L C
Sbjct: 517 LCFRTKRVYAKIHESKRQSRSAVVQRLAC 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,891
Number of Sequences: 37544
Number of extensions: 300166
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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