Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_O05
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical pr...   118   8e-27
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    31   1.5  
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    31   1.5  
EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA...    31   1.5  
EF523769-1|ABS18835.1|  327|Caenorhabditis elegans ELAV-type RNA...    31   1.5  
EF523768-1|ABS18834.1|  378|Caenorhabditis elegans ELAV-type RNA...    31   1.5  
EF523767-1|ABS18833.1|  193|Caenorhabditis elegans ELAV-type RNA...    31   1.5  
EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA...    31   1.5  
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   6.0  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical
           protein B0035.5 protein.
          Length = 522

 Score =  118 bits (283), Expect = 8e-27
 Identities = 54/126 (42%), Positives = 79/126 (62%)
 Frame = +2

Query: 311 KKHQNSSPTTTSRSSCIETNMENKTEFDYPHTFVLLGASGDLARKKIYPTIWYLYRDNLL 490
           K+H  S P +     C+  +M+   +F+ P+ FV+ GASGDLA+KKIYPT+W+L+RDNLL
Sbjct: 4   KRHSVSDPISKDLVECLRESMQRDLKFETPYVFVIFGASGDLAKKKIYPTLWWLFRDNLL 63

Query: 491 PHNTKFIGYARTKQSVSEVRERCQKYMKIRPGEEEKLETFWNANNYVSGSYDGRIDYEFL 670
           P N KFIGYAR+  +V ++RE  +K  K+R  E+   + F    +YV G YD    ++ L
Sbjct: 64  PVNIKFIGYARSDLTVFKLRESFEKNCKVRENEKCAFDDFIKKCSYVQGQYDTSEGFQRL 123

Query: 671 NRIISN 688
              I +
Sbjct: 124 QSSIDD 129


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA
           binding protein variantE protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>EF523769-1|ABS18835.1|  327|Caenorhabditis elegans ELAV-type RNA
           binding protein variantD protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>EF523768-1|ABS18834.1|  378|Caenorhabditis elegans ELAV-type RNA
           binding protein variantC protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>EF523767-1|ABS18833.1|  193|Caenorhabditis elegans ELAV-type RNA
           binding protein variantB protein.
          Length = 193

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA
           binding protein variantA protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PDS-RINFFSSQVPRRTEEYKCMRII-KFSFVFHVCF----NTRTSRSCCWTT 326
           PD+  I  F  Q+PR+  E  C R+  K+  VF        +T+ S+ CC+ T
Sbjct: 50  PDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -1

Query: 592 FFSWAYFHVLLTPFSYFGNRLLSTRITNKLGVMRQKVITI*IPDSRINFFSSQVPRRTEE 413
           F  W    VL      F   L  T + + L     K+I+  + + R   F  + P  TEE
Sbjct: 425 FEGWLPDEVLWRSKEGFAEALGKTDLGDILAEHCDKLISKSLYERRAERFPDRTPETTEE 484

Query: 412 YKCMRIIKFSFVFHV---CFNTRTSRSCCW 332
           Y   +I + +FV+       +T+  R+  W
Sbjct: 485 YWYRQIFEDTFVYDKMGHLVHTKVYRTAAW 514


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 479 DNLLPHNTKFIGYARTKQSVSEVRERCQKYMKIRPGE 589
           + LLPH  + +G+  TK+ + E+R +  +  K  P +
Sbjct: 76  EKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAK 112


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 545 VRERCQKYMKIRPGEEEKLETFWNANNYVSG 637
           +R   +     RP E+ K E  WN N Y++G
Sbjct: 544 LRHAIEAIETFRPNEQLKAEIRWNDNTYITG 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193,572
Number of Sequences: 27780
Number of extensions: 312955
Number of successful extensions: 895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)