Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N23
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...   135   7e-33
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    29   1.2  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   2.8  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   3.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   4.9  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.5  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   6.5  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   8.6  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score =  135 bits (327), Expect = 7e-33
 Identities = 88/243 (36%), Positives = 127/243 (52%), Gaps = 6/243 (2%)
 Frame = +1

Query: 193 RILELYSGIGGMHCAWNESTIKGKVVAAIDINTVANDVYKYNFPETLLFTKNIQSLTPIE 372
           R+LELYSGIGGMH A N + I   +V AIDIN  AN++Y  N  + L    +I +LT  +
Sbjct: 8   RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGK-LAKHMDISTLTAKD 66

Query: 373 IEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTL-QYILMENVKGF 549
            + +      MSP CQPFTR G   D  DPR+ +FL  +++L  +N L +YIL+ENV+GF
Sbjct: 67  FDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGF 126

Query: 550 ECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKRN--NTWNFKRKDELI 723
           E S       + L  CG+   E +LSP    +PNSR R+Y +A+ N    W+     +  
Sbjct: 127 EESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLARLNFKGEWSIDDVFQFS 186

Query: 724 TCLPKTFAKPHCLKDIIE-NNVPDDYLVPDKMLRK-AIYLTFGYADSNRSCCLLK-HHHY 894
               K   +   ++D +E       Y+V + +L K          DS+  CC  + + H 
Sbjct: 187 EVAQKE-GEVKRIRDYLEIERDWSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHL 245

Query: 895 VXG 903
           V G
Sbjct: 246 VQG 248


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 782 LFSIISLRQ*GFAKVFGRHVISSSFLLKFHVL 687
           LFS IS     + KVFGR  I + FLL FH++
Sbjct: 19  LFSAISFGISIYIKVFGRSSIVTFFLLCFHLV 50


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 544 GFECSTVRNLFVEKLTYCGFVYQEFMLSPVS 636
           GF CS   ++F E   +C   + +F + P+S
Sbjct: 262 GFVCSVCLSIFCEPRVHCSTCHTKFTVEPMS 292


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 196 FCVPFFPPSLSLHLQKKNISQ 134
           FCVPFF  S  +H   K++ Q
Sbjct: 12  FCVPFFSKSARIHTLSKDVFQ 32


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 687 IPFSYTIIPQS*IRHSNT--YRTQHKLLIDKSTVS 589
           +PF  TIIP+S ++ ++T  Y   H +  DK T +
Sbjct: 352 VPFPSTIIPESTVKENSTRPYVNSHLVANDKITAT 386


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 664 YYCIAKRNNTWNFKRKDE 717
           YYC+   + TWNF   DE
Sbjct: 49  YYCLLYASYTWNFVLSDE 66


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -1

Query: 542  LTFSIKIY*RVFNLSNISMKYKNELVLGSFSSKFFPLRVKGWQGGDMRTV-----SILYF 378
            +TF+  ++  +FN      + K+   LG FS++ F + V G   G    V       ++ 
Sbjct: 793  MTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQ 852

Query: 377  SISIGVKDCIFLV 339
            + +IG+KD + L+
Sbjct: 853  TEAIGLKDVLILL 865


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 709 KDELITCLPKTFAKPH 756
           KD+L+ CLPKT AK H
Sbjct: 257 KDDLV-CLPKTVAKAH 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,812,503
Number of Sequences: 5004
Number of extensions: 84578
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)