Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N23
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL117204-27|CAB55133.2|  241|Caenorhabditis elegans Hypothetical...    31   1.2  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    29   3.6  
AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine re...    29   6.2  

>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 191  CSIFSSIVELTFTKKKHITVR**STRNNTKYKLCVESINQDTCLSLISK 45
            CS+   +VE   T++K I+VR    RN  K+K  ++ ++  T  S ISK
Sbjct: 1042 CSV-DGVVETPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISK 1089


>AL117204-27|CAB55133.2|  241|Caenorhabditis elegans Hypothetical
           protein Y116A8C.43 protein.
          Length = 241

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 721 ITCLPKTFAKPHCLKDIIENNVPDDYLVPDKMLRKAIYLTFGYADSNRSCCLLKH 885
           IT    TF     +    EN + DDY +  K+ ++A Y+ F +  +N   C++++
Sbjct: 186 ITIRVPTFVGEDVIWQFAENILRDDYYILLKITKEASYIEFYFFANNEYQCMMRY 240


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 424 FTRNGKNLDENDPRTNSFLYFIDILDKLNTL-QYILMENVK 543
           F R G+N+DE   +   +LY I I   LNT+  +I   N+K
Sbjct: 179 FQRQGRNIDELTTQIMIYLYIIAICLSLNTIGWFISWRNLK 219


>AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein128 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = -1

Query: 260 PLIVLSFQAQCMPPIPL*SSNILCSIFSSIVELTFTKKKHITVR**STRNNTKYKLCVES 81
           PL  LSF    +PP    S  I+C+ +++I  + F K +H +++      N K +LC   
Sbjct: 83  PLGFLSFLG--VPPGYQASILIICASYTAISIINFYKNRHHSMKHGPNSQNLKTRLCRYV 140

Query: 80  INQDTCLSLISKILRI 33
                C++ ++ ++ I
Sbjct: 141 YIAANCVAAVAFLVPI 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,805,487
Number of Sequences: 27780
Number of extensions: 464445
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)