Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N22
         (975 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     30   2.4  
06_01_0486 - 3455030-3455770                                           29   4.2  
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880...    29   7.4  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    29   7.4  

>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +2

Query: 752 GXPAPAFXPSGETLVPFXLAPPXXXXXXPXLG--SSXPXLGXFVPNPPGXPXPXP 910
           G P     P G   VP   APP      P  G  +S P +G   P PPG   P P
Sbjct: 384 GKPPQPAVPPGPPAVP---APPTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVP 435


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +2

Query: 758 PAPAFXPSGETLVPFXLAPPXXXXXXPXLGSSXPXLGXFVPNPPGXPXPXP 910
           P P + PS    VP  + PP      P +    P    +VP PP  P P P
Sbjct: 88  PTPPYVPSPPPYVPPYIPPPTPPYVPPYI---PPPTPPYVP-PPTPPSPPP 134


>09_04_0324 -
           16686872-16687074,16687479-16687521,16687735-16688068,
           16688190-16688854
          Length = 414

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 810 PHPXXVXPXRXXGRPXPXWGCLSRTPRXSPXQXPXSG 920
           P P    P      P P W  L R PR  P   P  G
Sbjct: 13  PPPAPAPPSSRWDTPVPQWVILWRVPRVYPADVPSKG 49


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +2

Query: 758 PAPAFXPSGETLVPFXLAPPXXXXXXPXLGSSXPXLGXFVPNPPGXPXP 904
           PA A   S     P    P       P L S+ P L    P PP  P P
Sbjct: 38  PAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPP 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,154
Number of Sequences: 37544
Number of extensions: 203551
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)