Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N16
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    39   0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.025
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.72 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 24/92 (26%), Positives = 26/92 (28%)
 Frame = +3

Query: 660 PPXHPPQXPPXTPXXXKXRRXXXXXXXXPPATPPXXPPXSXPXGXPXXXPPXPPPGTXXX 839
           PP  P +  P  P      R        PP+ PP  PP S P   P   P   P      
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP-SLPPSAPPSLPMGAPAAPPLP 450

Query: 840 XXXPXXRXXKXGXXXPPQAGXXCXKPPXXPPP 935
              P       G    P        PP  P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 33.1 bits (72), Expect = 0.059
 Identities = 18/63 (28%), Positives = 19/63 (30%)
 Frame = +3

Query: 744 PPATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXPXXRXXKXGXXXPPQAGXXCXKPPX 923
           PP+ P   PP   P       PP PPP        P              A     KPP 
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292

Query: 924 XPP 932
            PP
Sbjct: 293 PPP 295



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 22/88 (25%), Positives = 25/88 (28%)
 Frame = +3

Query: 672 PPQXPPXTPXXXKXRRXXXXXXXXPPATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXP 851
           PP  PP  P      +          + PP  PP   P        P PP G       P
Sbjct: 311 PPPPPP--PSRRNRGKPPIGNGSSNSSLPPPPPP---PRSNAAGSIPLPPQGRSAPPPPP 365

Query: 852 XXRXXKXGXXXPPQAGXXCXKPPXXPPP 935
                  G   PP +       P  PPP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +3

Query: 684 PPXTPXXXKXRRXXXXXXXXPPATPPXXPPXSXPXGXPXXXPPXP 818
           PP  P     R          PA PP  PP +     P   PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 23/92 (25%), Positives = 24/92 (26%)
 Frame = +2

Query: 668 PPXPKXPXNXXAXEXPTXXKXXXXXXPCNPPXXXPLXPXXRXXXXLPPXXXPGNPRRXXX 847
           PP P  P      + P          P  PP   P          LPP      P     
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP---PPRSNAAGSIPLPPQGRSAPP---PP 364

Query: 848 PXLKXPKXGXXXPPPSGXXXXXTPRRTPPXXP 943
           P    P  G   PP S       P   PP  P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/75 (25%), Positives = 22/75 (29%)
 Frame = +1

Query: 631 LGGXFPWGSXPLXTXPKXPPQXPRXRXPDGXXXTXXXXPLQXXXXXXXXXXPPVXPXXXP 810
           LG      + P+ T P  PP  P    P          P            PP+ P   P
Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL-PAGMP 464

Query: 811 XXXPREPXXXPXXPP 855
              P  P   P  PP
Sbjct: 465 AAPPL-PPAAPAPPP 478



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/73 (23%), Positives = 19/73 (26%)
 Frame = +3

Query: 672 PPQXPPXTPXXXKXRRXXXXXXXXPPATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXP 851
           PP  PP  P               PP  PP     +         PP PPP +      P
Sbjct: 267 PPNSPPR-PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP 325

Query: 852 XXRXXKXGXXXPP 890
                      PP
Sbjct: 326 PIGNGSSNSSLPP 338


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = +1

Query: 784 PPVXPXXXPXXXPREPXXXPXXPPXGTXXGVXPSPPKRGXXAXNPPXXPPXXP 942
           PP  P       P  P   P  PP     G  P PP  G     PP  PP  P
Sbjct: 732 PPPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 747 PATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXP 851
           PA  P  PP     G P   PP PPPG       P
Sbjct: 746 PAPIPVPPPAPIMGGPP---PPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
 Frame = +3

Query: 684 PPXTPXXXKXRRXXXXXXXXPPAT----PPXXPPXSXPXGXPXXXPPXPPP 824
           PP  P               PPA     PP  PP     G     PP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
 Frame = +3

Query: 663  PXHPPQXPPXTPXXXKXRRXXXXXXXXPP-ATPPXXPPXSXPXGXPXXXPPXPPPGTXXX 839
            P HP   PP  P      +        PP + PP       P G P   PP  P  +   
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742

Query: 840  XXXPXXR 860
               P  R
Sbjct: 1743 VPNPGDR 1749



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +3

Query: 744  PPATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXPXXRXXKXGXXXPPQAGXXCXKPPX 923
            P +TPP  P  + P   P    P PPP        P       G    P         P 
Sbjct: 1686 PVSTPPVRPQSAAP---PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742

Query: 924  XPPP 935
             P P
Sbjct: 1743 VPNP 1746


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 744 PPATPPXXPPXSXPXGX--PXXXPPXPPPG 827
           PP  PP  PP   P G   P   PP PPPG
Sbjct: 5   PPGNPPPPPP---PPGFEPPSQPPPPPPPG 31


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
 Frame = +3

Query: 663 PXHPPQXPPXTPXXXKXRRXXXXXXXXPPATPPXXPPXSXPX-GXPXXXPPXPPPGT 830
           P  PP  PP                    A  P  PP   P    P   PP PPP T
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPT 245


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +1

Query: 784 PPVXPXXXPXXXPREPXXXPXXPPXGTXXGVXPSPPKRGXXAXNPPXXPPXXP 942
           PP  P   P    + P      PP         SPP         P  PP  P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
 Frame = +3

Query: 744 PPATPPXXPPXSXPXGXPXXXPPXPPPGTXXXXXXPXXRXXKXGXXXPPQA----GXXCX 911
           PP + P  P  S P   P   PP P          P           PP A         
Sbjct: 139 PPTSAPPRP--SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196

Query: 912 KPPXXPPP 935
            PP  PPP
Sbjct: 197 MPPKVPPP 204


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 899 PRLGGXGXTPFXVPXGGXXGXXXGSRGXXXG 807
           PR+GG    P   P GG  G   G  G   G
Sbjct: 109 PRIGGGHHGPLHGPHGGFGGRGGGRMGGRGG 139


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +3

Query: 639  AXSXGLXPPXHPPQXPPXTPXXXKXRRXXXXXXXXPPATPP-XXPPXSXPXGXPXXXPPX 815
            A S G+ P   P    P  P   +           PP  PP   PP   P       PP 
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA---GLPPV 1229

Query: 816  PPP 824
            P P
Sbjct: 1230 PVP 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,976
Number of Sequences: 5004
Number of extensions: 18073
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)