Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N15
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    33   0.076
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.53 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.53 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.93 
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    29   1.2  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.8  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 20/72 (27%), Positives = 23/72 (31%)
 Frame = -2

Query: 925 GGRXAPXPXXGGXPGGXLGGXPXGXEXGGGXXGFSVGGXGXXTXXXXXXXXXXXXXXXFX 746
           G    P P   G PG   GG P     G     F++GG G                    
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGH 131

Query: 745 XXGGGGXGVXGG 710
              GGG G+ GG
Sbjct: 132 AFAGGG-GMGGG 142


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = -1

Query: 584 PLPGPXXRXPXVP*XRLPAGGPXTXAXXPXXRPPPPXXXTPPPXPGXVXXXP 429
           P+P P    P  P    P+  P      P   P PP     PP P  +   P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 849 SXPXGXPPKXPPGXPPXXGXGAXLPP 926
           S P   PP  PP  PP    GA   P
Sbjct: 422 SLPPSAPPSLPPSAPPSLPMGAPAAP 447



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
 Frame = +3

Query: 576 RKRGXPPXGXVG-----PTPPXPXXTEKKTPXXXGPKGPXPPXXPP 698
           R RG PP G        P PP P  +         P+G   P  PP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 812 PPHRKPXXAPPXFXPPGXPPQXPPRXXXXXGGGXXPPP 925
           PP   P   PP   PP  PP  PP            PP
Sbjct: 415 PPVPTPPSLPPS-APPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -1

Query: 521 PXTXAXXPXXRPPPPXXXTPPPXPGXVXXXP 429
           P   A  P   P PP    PPP P      P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 812 PPHRKPXXAPPXFXPPGXPPQXPP 883
           P +  P   PP F PP  PP  PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 536 LPAGGPXTXAXXPXXRPPPPXXXTPPPXPGXV 441
           LP G P      P   PP      PPP PG V
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPP--PPPPPGYV 33


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 895 GGXPGGXLGGXPXGXEXGGGXXGFSVGGXG 806
           GG PGG  GG P G   G G  G  +GG G
Sbjct: 227 GGGPGGFEGG-PGGFGGGPGGFGGGLGGFG 255



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 21/62 (33%), Positives = 21/62 (33%)
 Frame = -2

Query: 892 GXPGGXLGGXPXGXEXGGGXXGFSVGGXGXXTXXXXXXXXXXXXXXXFXXXGGGGXGVXG 713
           G  GG  GG P G    GG  GF  GG G                       GGG G  G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGF--GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248

Query: 712 GG 707
           GG
Sbjct: 249 GG 250



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = -2

Query: 892 GXPGGXLGGXPXGXEXGGGXXGFSVGGXG 806
           G PGG  GG P G   GGG  GF  GG G
Sbjct: 235 GGPGG-FGGGPGG--FGGGLGGFG-GGPG 259



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
 Frame = +3

Query: 408 GGXAXXFRXXXNGPXXGGGGXXXGGGGAPRGXXXXGXXAXCGEP--XSGHPGXXXXXP 575
           GG    F     GP  G GG    GG    G    G     G P    G PG     P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 612  PTPPXPXXTEKKTPXXXGPKGPXPPXXPPA 701
            P PP P    K  P    P    PP  PPA
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPA 1911


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +3

Query: 591 PPXGXVGPTP-PXPXXTEKKTPXXXGPKGPXPP 686
           PP   + PTP P P       P   GP  P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 815 PHRKPXXAPPXFXPPGXPPQXPPRXXXXXGGGXXPPP 925
           P   P   PP     G PP  PP       G   PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = -3

Query: 540 PAPRRXPXNXSXXPXXAPPPPX*--XNPPPPP 451
           P P   P      P   PPPP      PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 591 PPXGXVGPTPPXPXXTEKKTPXXXGPKGPXPPXXPPA 701
           PP   +G  PP P       P   G   P PP  PPA
Sbjct: 753 PPAPIMGGPPPPPPP-----PGVAGAGPPPPPPPPPA 784


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 913 APXPXXGGXPGGXLGGXPXGXEXG 842
           AP    GG PGG  GG P G + G
Sbjct: 614 APGGAPGGMPGGAPGGAPGGADNG 637


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = -1

Query: 575 GPXXRXPXVP*XRLPAGGPXTXAXXPXXRPPPPXXXTPPPXPGXVXXXPKXXGXXSPCXX 396
           GP    P +P  + PAGGP         R P P    P   PG V           P   
Sbjct: 508 GPMPMYPGMP-TQFPAGGPAPGYPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVP 566

Query: 395 GL 390
           G+
Sbjct: 567 GM 568


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = -3

Query: 624  WGGXAPXXPXGGXPA---SGAXXXXXXGALXPAPRRXPXNXSXXPXXAPPPPX*XNPPPP 454
            +GG AP  P    P    S A          P P   P   S  P  A PP    + PPP
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP----SAPPP 1733

Query: 453  P 451
            P
Sbjct: 1734 P 1734


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -2

Query: 925 GGRXAPXPXXGGXPGGXLGGXPXGXEXGGGXXGFSVGGXG 806
           GGR       GG  GG  GG   G   GG   GF  G  G
Sbjct: 138 GGRGGFRGGRGGSRGG-FGGNSRGGFGGGSRGGFGGGSRG 176



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 925 GGRXAPXPXXGGXPGGXLGGXPXGXEXGGGXXGFSVGG 812
           GGR       GG   G  GG   G   GGG  G S GG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGG-FGGGSRGGSRGG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,833
Number of Sequences: 5004
Number of extensions: 23147
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)