Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N15
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.74 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 812 PPHRKPXXAPPXFXPPGXPPQXPP 883
           PP+  P   PP   PPG PP   P
Sbjct: 39  PPN--PSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.98
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 545 RAPXXXXXXAPEAGXPPXGXXGAXPPQ 625
           +AP       P  G PP G  GA P Q
Sbjct: 32  QAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 815 PHRKPXXAPPXFXPPGXPPQXPP 883
           P R     P    PPG PP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 861 GXPPKXPPGXPP 896
           G PP  PPG PP
Sbjct: 45  GPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
 Frame = +3

Query: 534 EPXSGHPGXXXXXPR-----KRGXPPXGXVGPTPPXP 629
           +P SG PG      +     +RG PP    GP P  P
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
 Frame = -3

Query: 540 PAPRRXPXNXSXXPXXAPPPPX*XNPPP--PP 451
           P P+  P      P    PP     PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,766
Number of Sequences: 438
Number of extensions: 5938
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)