Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_N14
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 37 0.005
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 34 0.032
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 32 0.13
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.23
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 28 2.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 2.1
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe... 27 2.8
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 4.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.8
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 8.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 8.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 26 8.5
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 394 YLIRWKGYSADSDTWEPEQTLS-CPELIGKF 483
Y IRW YS+ SDTWEP + LS C ++ ++
Sbjct: 27 YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 358 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 480
+ D G Y I+W GY +TWEPEQ L E + K
Sbjct: 28 LADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 358 ILDS--KKIKGKLHYLIRWKGYSADSD-TWEPEQTLS-CPELIGKF 483
ILDS KK Y ++W+GY SD TW E+ + C ELI +
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 382 GKLHYLIRWKGYSADSD-TWEPEQTLS-CPELI 474
G YL++W+GY SD TW E S C +LI
Sbjct: 96 GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 379 KGKLHYLIRWKGYSADSDTWEPEQTLS 459
K YLI+W+ S +TWE TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 379 KGKLHYLIRWKGYSADSDTWE 441
+GK Y ++W+ D+ TWE
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWE 337
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 127 DDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNND 240
D+D+ + + ++ DQTA +NK + DES D
Sbjct: 1847 DEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQD 1884
>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +1
Query: 601 DTSADENAEYEVERILXV---HHQEKWKKRIFDPLGRAGLASLTHGNL 735
+++++ +AE + R+L H ++WK+RI +P RA + S+T NL
Sbjct: 177 NSTSEGSAEKNLVRMLCYSGFHEDDEWKRRIQEP-HRACITSVTLTNL 223
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 620 MLNMRSSVSXKYITKKNGKREFLIHWEGL 706
+L+ RSS ++ T + K EFLI W L
Sbjct: 563 LLSARSSDGNEHETSRRIKTEFLIQWSSL 591
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 401 FAGKDILQTVILGNLSKLCLVLN*SENLMKKRRI-----LKIRNENLVL 532
+ G+ L+ ++ N+S +CLV S+ K+R I L+I +EN+++
Sbjct: 655 YFGRRFLEYLVKLNISVVCLVRESSDEAAKERLISLVPSLRISSENIIV 703
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 109 ISKNRTDDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFS 249
+ +N D++ +S+T + + N+ + TDE + N D FS
Sbjct: 58 VEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTDEEAEDNEDTFS 104
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 382 GKLHYLIRWKGYSADSDTWE 441
G + YL++WK D TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 79 VLLIKFIMRKISKNRTDDDVVSSTNGSLLNDD 174
+ + + + ++ S NRTDDD + S S L +D
Sbjct: 378 IFVHQLVRQRYSVNRTDDDDLQSEPSSSLTND 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,616
Number of Sequences: 5004
Number of extensions: 47566
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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