Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N14
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    41   2e-05
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.95 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 355 KILDSKKIKGKLHYLIRWKGYSADSDTWEP-EQTLSCPELIGKF 483
           +IL  K+IKG   YLI+WK +    +TWEP    ++C +++ +F
Sbjct: 248 QILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEF 291



 Score = 33.5 bits (73), Expect = 0.003
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 699 KGWSSKFDSWEPESNL-NCSELIK 767
           K W  K+++WEP SNL NCS++++
Sbjct: 266 KNWDLKYNTWEPISNLINCSDILE 289


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +1

Query: 40  RXCLLIFVDILRRVLLIKFIMRKISKNRTDDDVVSSTNGSLLNDDQTATENKTVESVTDE 219
           R   ++F+ +L R LLI+   +   +   ++ VV   NG+ +        N       DE
Sbjct: 335 RWVRVVFIQVLPRFLLIERPKKDEDEEEEEEVVVVGRNGAGVG---AMNANGEAVGEVDE 391

Query: 220 SVDQNNDD 243
             D + DD
Sbjct: 392 DDDDDGDD 399


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 164 NKDPLVDDTTSSSVRFF 114
           + DPLV +TTS  VR F
Sbjct: 34  HNDPLVVETTSGLVRGF 50


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 164 NKDPLVDDTTSSSVRFF 114
           + DPLV +TTS  VR F
Sbjct: 34  HNDPLVVETTSGLVRGF 50


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 476  PISSGQDKVCSGSQVSLSAE 417
            P S+   +VC GSQ+ +S E
Sbjct: 1233 PRSNADYEVCIGSQIMVSPE 1252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,928
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)