Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_N13
(1009 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 40 0.019
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 40 0.019
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 40 0.019
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 40 0.019
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 40 0.019
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 33 1.6
AB051514-1|BAB21818.1| 1130|Homo sapiens KIAA1727 protein protein. 33 1.6
D86968-1|BAA13204.2| 1626|Homo sapiens KIAA0213 protein. 33 2.2
U19927-1|AAC50140.1| 502|Homo sapiens WAS protein. 32 3.8
U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome ... 32 3.8
BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrom... 32 3.8
BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein. 32 3.8
AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrom... 32 3.8
AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant pr... 31 5.0
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 39.5 bits (88), Expect = 0.019
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +3
Query: 588 PPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXP-XFXPRXXXXSXXPXNHXP-P 761
PP G P P P G PG P P G P P P P P + P H P P
Sbjct: 287 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
Query: 762 XXXVPGXAXXXARRXVPP 815
P A PP
Sbjct: 347 PPGAPPPAPHVNPAFFPP 364
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXPXFXP 716
PPP G P P P P +P P G P P P F P
Sbjct: 317 PPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFP 363
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 39.5 bits (88), Expect = 0.019
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +3
Query: 588 PPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXP-XFXPRXXXXSXXPXNHXP-P 761
PP G P P P G PG P P G P P P P P + P H P P
Sbjct: 287 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
Query: 762 XXXVPGXAXXXARRXVPP 815
P A PP
Sbjct: 347 PPGAPPPAPHVNPAFFPP 364
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXPXFXP 716
PPP G P P P P +P P G P P P F P
Sbjct: 317 PPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFP 363
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 39.5 bits (88), Expect = 0.019
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +3
Query: 588 PPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXP-XFXPRXXXXSXXPXNHXP-P 761
PP G P P P G PG P P G P P P P P + P H P P
Sbjct: 214 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 273
Query: 762 XXXVPGXAXXXARRXVPP 815
P A PP
Sbjct: 274 PPGAPPPAPHVNPAFFPP 291
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXPXFXP 716
PPP G P P P P +P P G P P P F P
Sbjct: 244 PPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFP 290
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 39.5 bits (88), Expect = 0.019
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +3
Query: 588 PPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXP-XFXPRXXXXSXXPXNHXP-P 761
PP G P P P G PG P P G P P P P P + P H P P
Sbjct: 324 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 383
Query: 762 XXXVPGXAXXXARRXVPP 815
P A PP
Sbjct: 384 PPGAPPPAPHVNPAFFPP 401
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXPXFXP 716
PPP G P P P P +P P G P P P F P
Sbjct: 354 PPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFP 400
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 39.5 bits (88), Expect = 0.019
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +3
Query: 588 PPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXP-XFXPRXXXXSXXPXNHXP-P 761
PP G P P P G PG P P G P P P P P + P H P P
Sbjct: 287 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
Query: 762 XXXVPGXAXXXARRXVPP 815
P A PP
Sbjct: 347 PPGAPPPAPHVNPAFFPP 364
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXPXFXP 716
PPP G P P P P +P P G P P P F P
Sbjct: 317 PPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFP 363
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 33.1 bits (72), Expect = 1.6
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXP--XXGXPXPXXPXXPXFXPRXXXXSXXPXNHXP 758
PPP P P P P P P G P P P P P P P
Sbjct: 294 PPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPP 353
Query: 759 PXXXVPGXAXXXARRXVPP 815
P P PP
Sbjct: 354 PLPNSPAPPNPGGPPPAPP 372
>AB051514-1|BAB21818.1| 1130|Homo sapiens KIAA1727 protein protein.
Length = 1130
Score = 33.1 bits (72), Expect = 1.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 740 PXXPPXAXLXCXRXXXXXGPAPGPPRXXSXLPXVSPPXPG 859
P PP C R P P PP P + PP PG
Sbjct: 26 PPPPPSPPCSCSREECPSSPPPPPPPPLPGEPPIPPPPPG 65
>D86968-1|BAA13204.2| 1626|Homo sapiens KIAA0213 protein.
Length = 1626
Score = 32.7 bits (71), Expect = 2.2
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Frame = +2
Query: 284 PRRXVPLXRGXAXSX-GS*PVGXAPXXSXXRSMTAQPLHEGIXGPLEEAXRXXVPRPSXX 460
PRR L RG S P AP +TA+ H G+ + EA VP P+
Sbjct: 24 PRRARLLRRGRGGGGVESLPHFGAPVPRARLQLTARRGHAGLRARMREAAAALVPPPAFA 83
Query: 461 XXPAXPXRXGLXXXXXXGXPPXPQPPP 541
PA PP P PPP
Sbjct: 84 VTPAAAME------EPPPPPPPPPPPP 104
>U19927-1|AAC50140.1| 502|Homo sapiens WAS protein.
Length = 502
Score = 31.9 bits (69), Expect = 3.8
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP GR P P A P +P P G P P P P P P
Sbjct: 359 PPPPGRGGPPPPPPPATGRSGP-LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 417
Query: 765 XXVP 776
VP
Sbjct: 418 ALVP 421
>U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome
protein protein.
Length = 502
Score = 31.9 bits (69), Expect = 3.8
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP GR P P A P +P P G P P P P P P
Sbjct: 359 PPPPGRGGPPPPPPPATGRSGP-LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 417
Query: 765 XXVP 776
VP
Sbjct: 418 ALVP 421
>BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrome
(eczema-thrombocytopenia) protein.
Length = 502
Score = 31.9 bits (69), Expect = 3.8
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP GR P P A P +P P G P P P P P P
Sbjct: 359 PPPPGRGGPPPPPPPATGRSGP-LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 417
Query: 765 XXVP 776
VP
Sbjct: 418 ALVP 421
>BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein.
Length = 514
Score = 31.9 bits (69), Expect = 3.8
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP GR P P A P +P P G P P P P P P
Sbjct: 371 PPPPGRGGPPPPPPPATGRSGP-LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 429
Query: 765 XXVP 776
VP
Sbjct: 430 ALVP 433
>AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrome
protein protein.
Length = 502
Score = 31.9 bits (69), Expect = 3.8
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP GR P P A P +P P G P P P P P P
Sbjct: 359 PPPPGRGGPPPPPPPATGRSGP-LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 417
Query: 765 XXVP 776
VP
Sbjct: 418 ALVP 421
>AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant
protein.
Length = 410
Score = 31.5 bits (68), Expect = 5.0
Identities = 20/78 (25%), Positives = 20/78 (25%)
Frame = +3
Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPPX 764
PPP P P P P P P P P P P PP
Sbjct: 319 PPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPP 378
Query: 765 XXVPGXAXXXARRXVPPG 818
PG PPG
Sbjct: 379 AVPPGGQPPVPPPIPPPG 396
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,454,336
Number of Sequences: 237096
Number of extensions: 1766768
Number of successful extensions: 7767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7031
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13489131544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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