Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N13
         (1009 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.74 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.74 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.74 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    28   9.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +3

Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXP 716
           PPP G  P   P P     G P  P P  G   P  P  P + P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGP-PPPPPPGMFAPMAPVIPDYLP 805



 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +3

Query: 588 PPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXP 704
           PP    P   P P       GG P  P P  G P P  P  P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +3

Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXP 716
           PPP G  P   P P     G P  P P  G   P  P  P + P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGP-PPPPPPGMFAPMAPVIPDYLP 805



 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +3

Query: 588 PPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXP 704
           PP    P   P P       GG P  P P  G P P  P  P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +3

Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXPXXPXFXP 716
           PPP G  P   P P     G P  P P  G   P  P  P + P
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGP-PPPPPPGMFAPMAPVIPDYLP 388



 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +3

Query: 588 PPXGRXPXXXPXPXAXX---GGXPGVPXPXXGXPXPXXPXXP 704
           PP    P   P P       GG P  P P  G P P  P  P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -1

Query: 715 GXXXGXXGXXGXGXPXXGXGTPGXPPXXAXGXGXXXGXRPXGGG 584
           G   G  G  G G    G   P  PP    G G   G    GGG
Sbjct: 34  GGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGG 77


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 585 PPPXGRXPXXXPXPXAXXGGXPGVPXPXXGXPXPXXP 695
           PPP        P P    GG P  P P  G P P  P
Sbjct: 84  PPPPPMFAGGIPPPPPMMGGIP-PPPPMFGAPPPPPP 119


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
 Frame = +3

Query: 591 PXGRXPXXXPXPXAXXGGXPGVPXP--XXGXPXPXXPXXPXFXPRXXXXSXXPXNHXPP 761
           P G      P   A   G PGVP P    G P P  P  P   P        P     P
Sbjct: 179 PAGPPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQP 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,556,105
Number of Sequences: 27780
Number of extensions: 220587
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)