Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_N08
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 58 1e-08
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 56 5e-08
08_01_0838 - 8185083-8185910 31 1.7
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.9
02_02_0359 - 9390175-9390416,9390924-9391044,9391069-9391410,939... 29 3.9
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 29 3.9
08_01_0085 - 626428-627822 29 6.8
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 9.0
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Frame = +3
Query: 543 DQENVEDEHGE-----------WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 689
D + VE+E GE W G+D DY+YDELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNYDELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 690 RPP 698
RPP
Sbjct: 146 RPP 148
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 697 PQVVRIGTKKTSLCQFYGNL*NFASXGQALXGFLLAELGTSGSVDG 834
PQV+R GTKKT F + + FLLAE+GTSGS+DG
Sbjct: 148 PQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDG 193
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 722 RKPPFANFTEICKTLHRXAKHXWDFFWRNWVLVVQW-MEQSTNFKGRFHKTDXECLRR 892
+K F NF ++CKT+HR +H F +Q KGRF + E + R
Sbjct: 156 KKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILR 213
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 55.6 bits (128), Expect = 5e-08
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Frame = +3
Query: 525 EDVRGEDQENVEDEHG-----EWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 689
+D GED+E G W G+D DY Y+ELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQIGEDEEGEGIVLGGATRYPWEGTDRDYKYEELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 690 RPP 698
RPP
Sbjct: 146 RPP 148
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 793 FLLAELGTSGSVDG 834
FLLAE+GTSGS+DG
Sbjct: 216 FLLAEMGTSGSLDG 229
>08_01_0838 - 8185083-8185910
Length = 275
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 210 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLD 311
D A AGE+G S+S + GD + EDD+ D
Sbjct: 84 DSSGASAGERGRSSSHRSDVKLGDAEEEEDDDED 117
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 219 AALAGEQGESTSMETPADTGDVDAPEDD 302
A LAG QGES +M P GD D +D+
Sbjct: 8 ARLAGSQGESPAMLHPNGDGDGDGGDDE 35
>02_02_0359 -
9390175-9390416,9390924-9391044,9391069-9391410,
9392400-9392759
Length = 354
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +3
Query: 606 DELLERVFDIMREKNPSMVSGKKQKFIMRPPPSSP 710
+E+LER++D+ + ++++ + F++ PPP P
Sbjct: 9 EEVLERIWDLHDRLSDAILAVSRAHFLLPPPPPPP 43
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 516 VTEEDVRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRP 695
V ++D G+ + E E V S +D Y+ + D + P SGK + +MRP
Sbjct: 248 VGDDDQDGDVDDETTAETDETVSSQNDVRYNPIWADA-DEAADLYPRQGSGKGWRELMRP 306
Query: 696 PPSSP 710
P P
Sbjct: 307 PSLYP 311
>08_01_0085 - 626428-627822
Length = 464
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 693 PPPSSPNWYKENLPLPILRKFVKL 764
PPP W+ + +P+PI F KL
Sbjct: 207 PPPVFDRWFVDGIPMPIPLPFAKL 230
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 510 ELVTEEDVRGEDQ--ENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKK 674
EL E + +G D+ E VE +W G + D +E+ ERV E+N + V +K
Sbjct: 364 ELKFEVEKKGVDENGEEVEFNLEDWDGDEEDDVLEEVYERVEREEMEENEAGVQQEK 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,437,781
Number of Sequences: 37544
Number of extensions: 319094
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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