Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N08
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical p...    41   0.001
Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical p...    41   0.001
Z50044-4|CAA90356.1|  164|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    29   6.2  
U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +3

Query: 537 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPP 698
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLP 119



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +1

Query: 697 PQVVRIGTKKTSLCQFYGNL*NFASXGQALXGFLLAELGTSGSVDGT 837
           P+V R G+KKT+   F           + +  FLLAELGT+GS+DG+
Sbjct: 119 PEVARAGSKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGS 165


>Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +3

Query: 537 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPP 698
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLP 119



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +1

Query: 697 PQVVRIGTKKTSLCQFYGNL*NFASXGQALXGFLLAELGTSGSVDGT 837
           P+V R G+KKT+   F           + +  FLLAELGT+GS+DG+
Sbjct: 119 PEVARAGSKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGS 165


>Z50044-4|CAA90356.1|  164|Caenorhabditis elegans Hypothetical
           protein F22B5.4 protein.
          Length = 164

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 776 PXDAKFYKFP*NWQREVFFVPIRTTWGWSHYELLLFTRYHAWVLFP 639
           P +A  +++  NW R+  FV +    G + Y+ L+    HA+ ++P
Sbjct: 36  PAEAGHFQYSRNWSRDPRFVKVAIQKGDTPYQFLVRRLGHAYEVYP 81


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 615 LERVFDIMREKNPSMVSGKKQKFIMRPPPSSPNWYKENLPLPILRKFVKLCI 770
           L R +  +  K    +    Q F+  PPP  P  Y +NL   I+ + +K  I
Sbjct: 288 LMRAYFSVENKTDKFIRADGQTFV--PPPKIPKEYMDNLSSDIMMRAIKTLI 337


>U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical
           protein F09F7.5b protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 516 VTEEDVRGEDQENVEDE-HGE-WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 689
           V+ E ++ E++ENVE+E  GE  +G +     D    ++ D   ++  +        FIM
Sbjct: 499 VSTEPLKEEEEENVEEEIKGENVIGEEFQVVGD---TKINDEQEDRVEATKDKINDAFIM 555

Query: 690 RPPPSS 707
            PPPS+
Sbjct: 556 LPPPSA 561


>U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical
           protein F09F7.5a protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 516 VTEEDVRGEDQENVEDE-HGE-WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 689
           V+ E ++ E++ENVE+E  GE  +G +     D    ++ D   ++  +        FIM
Sbjct: 500 VSTEPLKEEEEENVEEEIKGENVIGEEFQVVGD---TKINDEQEDRVEATKDKINDAFIM 556

Query: 690 RPPPSS 707
            PPPS+
Sbjct: 557 LPPPSA 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,163
Number of Sequences: 27780
Number of extensions: 293767
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)