Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N08
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    33   0.005
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 615 LERVFDIMREKNPSMVSGKKQKFIMRPPP 701
           L+++FDI  ++N  ++SG+ QK    PPP
Sbjct: 358 LDKIFDIATKENAMLLSGRSQKSTTGPPP 386


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 809  NSARRNPXNAWPXDAKFYKFP*NWQREVFFVPIRTTWGWSH 687
            N   R+P  AWP D+   + P     ++   P   T   SH
Sbjct: 910  NVTPRSPGRAWPGDSDIRQRPIPRSDDIRLSPAAYTANVSH 950


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 176 RRIKYHIVVHVY 141
           R +KY +VVHVY
Sbjct: 13  RALKYPMVVHVY 24


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 176 RRIKYHIVVHVY 141
           R +KY +VVHVY
Sbjct: 13  RALKYPMVVHVY 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,897
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)