Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N04
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    32   0.13 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    31   0.17 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.70 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   8.6  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 569 KVPVSYAHTVKATTPLWTAGLARVLF 646
           K+PVS  HTVKA +PL+T    R +F
Sbjct: 93  KIPVSTVHTVKALSPLFTVLAYRFMF 118


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 472 STRWPTNYWTRVLVPLGDRQTSYHTVLXSFHLESASLLCP 591
           + +W  NYW   LVP GD   S H +    HL   +++ P
Sbjct: 795 AVKWQHNYWKGKLVP-GDVLLSNHPIAGGVHLPDLTVVTP 833


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 279 THCAFFLSESTLKQSCYHRITED--L*FNNSLLFRTIHEIILCNIYIFGNQACLYYIVM* 106
           +H  F ++ +  + SC++ I     L  N  +    +++I LCN YI     C  YI+  
Sbjct: 9   SHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFLAKCFLYILRC 68

Query: 105 HGTISFL 85
             T+S L
Sbjct: 69  MSTVSLL 75


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 114 QYNISKPDYQKCICYTK 164
           Q++I KPD   C C+T+
Sbjct: 224 QFDIVKPDSSSCCCFTR 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,117
Number of Sequences: 5004
Number of extensions: 62363
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)